miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13945 3' -57 NC_003521.1 + 214775 0.66 0.946587
Target:  5'- cUCC-CCCCUCCcGcUCGcCGCcgUCCu -3'
miRNA:   3'- -AGGaGGGGAGGcC-AGCaGUGuaAGGu -5'
13945 3' -57 NC_003521.1 + 16848 0.66 0.946587
Target:  5'- aUCCUCCguCCUccCCGGUCGccUCGCAggCgCAg -3'
miRNA:   3'- -AGGAGG--GGA--GGCCAGC--AGUGUaaG-GU- -5'
13945 3' -57 NC_003521.1 + 68122 0.66 0.946587
Target:  5'- uUCCgCCCCaaccgcugUCCGuGUCGuucuucUCGCGUUCCu -3'
miRNA:   3'- -AGGaGGGG--------AGGC-CAGC------AGUGUAAGGu -5'
13945 3' -57 NC_003521.1 + 111643 0.66 0.946587
Target:  5'- gCgUCCCCUCCG-UCGcCGCuagUCCc -3'
miRNA:   3'- aGgAGGGGAGGCcAGCaGUGua-AGGu -5'
13945 3' -57 NC_003521.1 + 165308 0.66 0.937809
Target:  5'- uUCCUCUUCUCCuGUCuccGUCuucCGUUCCGc -3'
miRNA:   3'- -AGGAGGGGAGGcCAG---CAGu--GUAAGGU- -5'
13945 3' -57 NC_003521.1 + 173618 0.66 0.937809
Target:  5'- cUCCUCCCgUCCuccuucccgagaGGUCcGUCACuc-CCGa -3'
miRNA:   3'- -AGGAGGGgAGG------------CCAG-CAGUGuaaGGU- -5'
13945 3' -57 NC_003521.1 + 97429 0.67 0.917628
Target:  5'- aUCUCCCCUCCGucuccucCGUCGC-UUUCGa -3'
miRNA:   3'- aGGAGGGGAGGCca-----GCAGUGuAAGGU- -5'
13945 3' -57 NC_003521.1 + 224073 0.67 0.917628
Target:  5'- cUCCUCgUCCUCCGG-CGggcgCGCGcgCCGg -3'
miRNA:   3'- -AGGAG-GGGAGGCCaGCa---GUGUaaGGU- -5'
13945 3' -57 NC_003521.1 + 211879 0.67 0.917628
Target:  5'- aUCCUCCCC-CCGGaccgCGcuaCACAgggugaUCCAg -3'
miRNA:   3'- -AGGAGGGGaGGCCa---GCa--GUGUa-----AGGU- -5'
13945 3' -57 NC_003521.1 + 221668 0.67 0.912035
Target:  5'- gCCUCUCUUUCGGUgGUCgggagGCAcUCCGa -3'
miRNA:   3'- aGGAGGGGAGGCCAgCAG-----UGUaAGGU- -5'
13945 3' -57 NC_003521.1 + 6340 0.67 0.900198
Target:  5'- gCCgCCgCaCCGGcCGUCGCAUUCCc -3'
miRNA:   3'- aGGaGGgGaGGCCaGCAGUGUAAGGu -5'
13945 3' -57 NC_003521.1 + 24311 0.67 0.900198
Target:  5'- cUCgUCCCCUCCGGg---CACAgcgacgaUCCGa -3'
miRNA:   3'- -AGgAGGGGAGGCCagcaGUGUa------AGGU- -5'
13945 3' -57 NC_003521.1 + 98713 0.68 0.893958
Target:  5'- aCCUCCuCCUCUGcGUCGUCuCA--CCGu -3'
miRNA:   3'- aGGAGG-GGAGGC-CAGCAGuGUaaGGU- -5'
13945 3' -57 NC_003521.1 + 204345 0.68 0.873293
Target:  5'- cCCUCagcgucgUCCUCCGGuccuUCGUCGCGgcCCAg -3'
miRNA:   3'- aGGAG-------GGGAGGCC----AGCAGUGUaaGGU- -5'
13945 3' -57 NC_003521.1 + 68381 0.69 0.852235
Target:  5'- gCCUCCCCUCUccUCGUCGucUUCCu -3'
miRNA:   3'- aGGAGGGGAGGccAGCAGUguAAGGu -5'
13945 3' -57 NC_003521.1 + 130140 0.7 0.786639
Target:  5'- cUCCUCCUCcCCGGcCGUCAC---CCAc -3'
miRNA:   3'- -AGGAGGGGaGGCCaGCAGUGuaaGGU- -5'
13945 3' -57 NC_003521.1 + 207226 0.7 0.768816
Target:  5'- uUCCUCUCCUCCcGUgCGgUCACAgucUUCCGu -3'
miRNA:   3'- -AGGAGGGGAGGcCA-GC-AGUGU---AAGGU- -5'
13945 3' -57 NC_003521.1 + 29644 0.7 0.768816
Target:  5'- gUCCUCCucggCCUCgCGGUCGggGCAggCCAu -3'
miRNA:   3'- -AGGAGG----GGAG-GCCAGCagUGUaaGGU- -5'
13945 3' -57 NC_003521.1 + 14112 1.09 0.00403
Target:  5'- aUCCUCCCCUCCGGUCGUCACAUUCCAg -3'
miRNA:   3'- -AGGAGGGGAGGCCAGCAGUGUAAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.