miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13945 5' -59.3 NC_003521.1 + 227450 0.66 0.857447
Target:  5'- -cUGGgCUgGGAAgggcgGCGGAGGcGGGAGAa -3'
miRNA:   3'- cuGCCgGGgCCUU-----UGCCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 233116 0.67 0.850058
Target:  5'- cGCGGCCgggaGGGuccgcGGCGGcGGGGGAGGu -3'
miRNA:   3'- cUGCCGGgg--CCU-----UUGCCuCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 221668 0.67 0.850058
Target:  5'- aGACGGgaCgUGGguACGGAGGGuGAGAa -3'
miRNA:   3'- -CUGCCg-GgGCCuuUGCCUCCCcUUCU- -5'
13945 5' -59.3 NC_003521.1 + 141382 0.67 0.841728
Target:  5'- cGCGGUgCCCGauGAcgacagcAACGGAGGGGAAc- -3'
miRNA:   3'- cUGCCG-GGGC--CU-------UUGCCUCCCCUUcu -5'
13945 5' -59.3 NC_003521.1 + 30759 0.67 0.841727
Target:  5'- cAUGGCUuaCUGGAaacugcuggugguGACGGAGGGGcAGGu -3'
miRNA:   3'- cUGCCGG--GGCCU-------------UUGCCUCCCCuUCU- -5'
13945 5' -59.3 NC_003521.1 + 224201 0.67 0.834758
Target:  5'- uACGGCCauCUGGA---GGAGGuGGAGGAc -3'
miRNA:   3'- cUGCCGG--GGCCUuugCCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 31011 0.67 0.830038
Target:  5'- cGACGGCgCCGGcgaGGACgcguucgugguggugGGGGGuGGGAGGa -3'
miRNA:   3'- -CUGCCGgGGCC---UUUG---------------CCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 26095 0.67 0.818801
Target:  5'- aGACGGCUCCGGAGuCGGccAGGuaGAGu -3'
miRNA:   3'- -CUGCCGGGGCCUUuGCC--UCCccUUCu -5'
13945 5' -59.3 NC_003521.1 + 211121 0.67 0.818801
Target:  5'- --gGGCCCUacgccgguGGucugGACGGAGGGaGggGAc -3'
miRNA:   3'- cugCCGGGG--------CCu---UUGCCUCCC-CuuCU- -5'
13945 5' -59.3 NC_003521.1 + 203668 0.67 0.818801
Target:  5'- cGACGGCCUgGGAGGCGuGGccGGGAccuGAg -3'
miRNA:   3'- -CUGCCGGGgCCUUUGCcUC--CCCUu--CU- -5'
13945 5' -59.3 NC_003521.1 + 223859 0.67 0.818801
Target:  5'- --aGGUCUCGGAGGCcGAGGuGGAGGc -3'
miRNA:   3'- cugCCGGGGCCUUUGcCUCC-CCUUCu -5'
13945 5' -59.3 NC_003521.1 + 127508 0.67 0.810592
Target:  5'- gGAUGGCCaCCaGGuuGCGGuAGuGGAAGAg -3'
miRNA:   3'- -CUGCCGG-GG-CCuuUGCC-UCcCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 168496 0.67 0.810592
Target:  5'- gGGCGGC----GAGACGGAGGcGGAGGAc -3'
miRNA:   3'- -CUGCCGgggcCUUUGCCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 1439 0.67 0.809763
Target:  5'- -cCGGgccucguaaaaccCCCCGGGggUGGguucacauAGGGGAGGAa -3'
miRNA:   3'- cuGCC-------------GGGGCCUuuGCC--------UCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 150865 0.68 0.801396
Target:  5'- aACaGCCCaCGGGGACGugauaguGAGGaGGAGGAg -3'
miRNA:   3'- cUGcCGGG-GCCUUUGC-------CUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 175925 0.68 0.785127
Target:  5'- -cUGGCCCgaGGAGcCGGAGGaGGAcAGAc -3'
miRNA:   3'- cuGCCGGGg-CCUUuGCCUCC-CCU-UCU- -5'
13945 5' -59.3 NC_003521.1 + 19191 0.68 0.784258
Target:  5'- aGGCGGacgugaaucgaaaCCUCGGGccaGGCGugcGAGGGGAAGAu -3'
miRNA:   3'- -CUGCC-------------GGGGCCU---UUGC---CUCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 218092 0.68 0.776383
Target:  5'- cGGCGGCgCCGGuGACGauGAGGGcGuAGAg -3'
miRNA:   3'- -CUGCCGgGGCCuUUGC--CUCCC-CuUCU- -5'
13945 5' -59.3 NC_003521.1 + 92822 0.68 0.776383
Target:  5'- gGugGGCgauUCCGGGuuGGgGGAGGGGAAc- -3'
miRNA:   3'- -CugCCG---GGGCCU--UUgCCUCCCCUUcu -5'
13945 5' -59.3 NC_003521.1 + 11845 0.68 0.776383
Target:  5'- cGCGGgCCgCGGAGgugcuuGCGGuGaGGGAAGAc -3'
miRNA:   3'- cUGCCgGG-GCCUU------UGCCuC-CCCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.