miRNA display CGI


Results 61 - 80 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13946 3' -54 NC_003521.1 + 127655 0.67 0.964527
Target:  5'- gACCacCGCCUGUggCCGCC-CUUcAUCa -3'
miRNA:   3'- aUGGcuGCGGACAa-GGCGGuGAA-UAG- -5'
13946 3' -54 NC_003521.1 + 73408 0.67 0.967695
Target:  5'- aGgCGGCGCCg---CCGCCGCUg--- -3'
miRNA:   3'- aUgGCUGCGGacaaGGCGGUGAauag -5'
13946 3' -54 NC_003521.1 + 233082 0.67 0.967695
Target:  5'- cUGCCGcCGCC---UCCGCCGCUc--- -3'
miRNA:   3'- -AUGGCuGCGGacaAGGCGGUGAauag -5'
13946 3' -54 NC_003521.1 + 92280 0.67 0.970658
Target:  5'- cACCGcCGCCg---CCGCCGCgccUCg -3'
miRNA:   3'- aUGGCuGCGGacaaGGCGGUGaauAG- -5'
13946 3' -54 NC_003521.1 + 63302 0.67 0.97342
Target:  5'- gGCCGACgggGCCUG-UCCGCUGgUgggcGUCg -3'
miRNA:   3'- aUGGCUG---CGGACaAGGCGGUgAa---UAG- -5'
13946 3' -54 NC_003521.1 + 127806 0.67 0.97342
Target:  5'- gGCCGACgGCgUGcugCCGCCGCa---- -3'
miRNA:   3'- aUGGCUG-CGgACaa-GGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 173726 0.67 0.97342
Target:  5'- gUAUCGACGCCacuaCCGCCGg-UGUCa -3'
miRNA:   3'- -AUGGCUGCGGacaaGGCGGUgaAUAG- -5'
13946 3' -54 NC_003521.1 + 124143 0.66 0.975989
Target:  5'- cGCCGcUGCCUccgCCGCCGCUg--- -3'
miRNA:   3'- aUGGCuGCGGAcaaGGCGGUGAauag -5'
13946 3' -54 NC_003521.1 + 211645 0.66 0.978372
Target:  5'- aGCCGGCGCCUGa-CgGCCuACUa--- -3'
miRNA:   3'- aUGGCUGCGGACaaGgCGG-UGAauag -5'
13946 3' -54 NC_003521.1 + 19005 0.66 0.978372
Target:  5'- -gUCGGCGCCaccgCCGCCACg-AUCg -3'
miRNA:   3'- auGGCUGCGGacaaGGCGGUGaaUAG- -5'
13946 3' -54 NC_003521.1 + 62112 0.66 0.980575
Target:  5'- gACaGGCGCCgcgGUUCCGCgGCg---- -3'
miRNA:   3'- aUGgCUGCGGa--CAAGGCGgUGaauag -5'
13946 3' -54 NC_003521.1 + 5553 0.66 0.980575
Target:  5'- gGCCGcCGCCaucguUGUuccgUCCGUCGCU-GUCa -3'
miRNA:   3'- aUGGCuGCGG-----ACA----AGGCGGUGAaUAG- -5'
13946 3' -54 NC_003521.1 + 11444 0.66 0.980575
Target:  5'- gUACCGACGCCgacaUGUUUCuagGCUACUcGUa -3'
miRNA:   3'- -AUGGCUGCGG----ACAAGG---CGGUGAaUAg -5'
13946 3' -54 NC_003521.1 + 190044 0.66 0.980575
Target:  5'- cGCCGAuCGaCCaGgaCCGCCGCgcgGUCu -3'
miRNA:   3'- aUGGCU-GC-GGaCaaGGCGGUGaa-UAG- -5'
13946 3' -54 NC_003521.1 + 89022 0.66 0.980575
Target:  5'- cACCGGCGCCacggcggugaGUUCCucGCCGCUcAUg -3'
miRNA:   3'- aUGGCUGCGGa---------CAAGG--CGGUGAaUAg -5'
13946 3' -54 NC_003521.1 + 224278 0.66 0.980575
Target:  5'- -cCCGAcCGCCgGgcCCGCCGCUg--- -3'
miRNA:   3'- auGGCU-GCGGaCaaGGCGGUGAauag -5'
13946 3' -54 NC_003521.1 + 131152 0.66 0.982606
Target:  5'- gGCCGAuCGCa---UCCGCCGCUacGUCu -3'
miRNA:   3'- aUGGCU-GCGgacaAGGCGGUGAa-UAG- -5'
13946 3' -54 NC_003521.1 + 137878 0.66 0.982606
Target:  5'- -cCCGAgCGCCUGgaCCGCgACgccUCg -3'
miRNA:   3'- auGGCU-GCGGACaaGGCGgUGaauAG- -5'
13946 3' -54 NC_003521.1 + 218296 0.66 0.982606
Target:  5'- cUGCgGACGCCg---CCGCCGCc---- -3'
miRNA:   3'- -AUGgCUGCGGacaaGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 104156 0.66 0.982606
Target:  5'- -cCCGGCGCCUGUguggcuucuugcUCUGUCGCc---- -3'
miRNA:   3'- auGGCUGCGGACA------------AGGCGGUGaauag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.