miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13946 3' -54 NC_003521.1 + 14499 1.09 0.006634
Target:  5'- gUACCGACGCCUGUUCCGCCACUUAUCg -3'
miRNA:   3'- -AUGGCUGCGGACAAGGCGGUGAAUAG- -5'
13946 3' -54 NC_003521.1 + 143757 0.77 0.537828
Target:  5'- cACCGAUGCCgcgUCUGCCACUUcgacAUCa -3'
miRNA:   3'- aUGGCUGCGGacaAGGCGGUGAA----UAG- -5'
13946 3' -54 NC_003521.1 + 148897 0.76 0.577696
Target:  5'- gGCCGACGCCgaggaGcgCCGCCGCggcAUCg -3'
miRNA:   3'- aUGGCUGCGGa----CaaGGCGGUGaa-UAG- -5'
13946 3' -54 NC_003521.1 + 32415 0.76 0.577696
Target:  5'- cGCgGGCGCCU--UCCGCCGCUUGg- -3'
miRNA:   3'- aUGgCUGCGGAcaAGGCGGUGAAUag -5'
13946 3' -54 NC_003521.1 + 132861 0.75 0.648663
Target:  5'- uUGCgGACGCCgacgCCGCCGCUUccAUCa -3'
miRNA:   3'- -AUGgCUGCGGacaaGGCGGUGAA--UAG- -5'
13946 3' -54 NC_003521.1 + 221088 0.74 0.699108
Target:  5'- -cCCGACGCCgucaCCGCCACgcugGUCa -3'
miRNA:   3'- auGGCUGCGGacaaGGCGGUGaa--UAG- -5'
13946 3' -54 NC_003521.1 + 64542 0.73 0.738516
Target:  5'- cGCCGACGCCcg-UCUGCUGCUgcUCa -3'
miRNA:   3'- aUGGCUGCGGacaAGGCGGUGAauAG- -5'
13946 3' -54 NC_003521.1 + 52599 0.73 0.738516
Target:  5'- gGCCGugGgCCUGggUCCGCCGCc---- -3'
miRNA:   3'- aUGGCugC-GGACa-AGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 136071 0.72 0.78565
Target:  5'- cGCCG-CGCCUcccUCCGCCGCUgcUCc -3'
miRNA:   3'- aUGGCuGCGGAca-AGGCGGUGAauAG- -5'
13946 3' -54 NC_003521.1 + 103951 0.72 0.78565
Target:  5'- cACCGGCGCCac--CCGCCGCgaGUCc -3'
miRNA:   3'- aUGGCUGCGGacaaGGCGGUGaaUAG- -5'
13946 3' -54 NC_003521.1 + 192332 0.72 0.794704
Target:  5'- aGCCGACGCCUcacaaaCCGCCGCg---- -3'
miRNA:   3'- aUGGCUGCGGAcaa---GGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 101763 0.72 0.803613
Target:  5'- gGCCG-CGUCUGg-CCGCCGCUgcUCg -3'
miRNA:   3'- aUGGCuGCGGACaaGGCGGUGAauAG- -5'
13946 3' -54 NC_003521.1 + 32906 0.72 0.812368
Target:  5'- cGCCGuCGUCUGcgCCGCCGCg---- -3'
miRNA:   3'- aUGGCuGCGGACaaGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 99886 0.72 0.812368
Target:  5'- gGCCGugGCgCUGcgCCGCCgggcGCUgcagGUCa -3'
miRNA:   3'- aUGGCugCG-GACaaGGCGG----UGAa---UAG- -5'
13946 3' -54 NC_003521.1 + 188534 0.72 0.820963
Target:  5'- --aCGACGCCU--UCCGUCGCUUcAUCa -3'
miRNA:   3'- augGCUGCGGAcaAGGCGGUGAA-UAG- -5'
13946 3' -54 NC_003521.1 + 115223 0.71 0.829388
Target:  5'- gACUGACGCCgcagcagCCGCCGCUgcgCg -3'
miRNA:   3'- aUGGCUGCGGacaa---GGCGGUGAauaG- -5'
13946 3' -54 NC_003521.1 + 192713 0.71 0.861246
Target:  5'- aACCGGCGCCg---CCGCCAUg---- -3'
miRNA:   3'- aUGGCUGCGGacaaGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 125144 0.7 0.868716
Target:  5'- gGgCGACGCgCUGUgccugcugCCGCCGCUcuUCa -3'
miRNA:   3'- aUgGCUGCG-GACAa-------GGCGGUGAauAG- -5'
13946 3' -54 NC_003521.1 + 74207 0.7 0.868716
Target:  5'- -cCCGACGCCgucUUCUGCCACg---- -3'
miRNA:   3'- auGGCUGCGGac-AAGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 6085 0.7 0.875977
Target:  5'- gGCCGguGCGgCggcGUUCCGCCACggcUAUCu -3'
miRNA:   3'- aUGGC--UGCgGa--CAAGGCGGUGa--AUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.