miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13946 3' -54 NC_003521.1 + 5553 0.66 0.980575
Target:  5'- gGCCGcCGCCaucguUGUuccgUCCGUCGCU-GUCa -3'
miRNA:   3'- aUGGCuGCGG-----ACA----AGGCGGUGAaUAG- -5'
13946 3' -54 NC_003521.1 + 6085 0.7 0.875977
Target:  5'- gGCCGguGCGgCggcGUUCCGCCACggcUAUCu -3'
miRNA:   3'- aUGGC--UGCgGa--CAAGGCGGUGa--AUAG- -5'
13946 3' -54 NC_003521.1 + 11444 0.66 0.980575
Target:  5'- gUACCGACGCCgacaUGUUUCuagGCUACUcGUa -3'
miRNA:   3'- -AUGGCUGCGG----ACAAGG---CGGUGAaUAg -5'
13946 3' -54 NC_003521.1 + 13521 0.7 0.889849
Target:  5'- aACgGGCaugaGCCUGUUCCGCUACg---- -3'
miRNA:   3'- aUGgCUG----CGGACAAGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 14499 1.09 0.006634
Target:  5'- gUACCGACGCCUGUUCCGCCACUUAUCg -3'
miRNA:   3'- -AUGGCUGCGGACAAGGCGGUGAAUAG- -5'
13946 3' -54 NC_003521.1 + 18703 0.68 0.944979
Target:  5'- gGCCGGCGCgauccggCUGUggCUGCCGCUgg-Cg -3'
miRNA:   3'- aUGGCUGCG-------GACAa-GGCGGUGAauaG- -5'
13946 3' -54 NC_003521.1 + 19005 0.66 0.978372
Target:  5'- -gUCGGCGCCaccgCCGCCACg-AUCg -3'
miRNA:   3'- auGGCUGCGGacaaGGCGGUGaaUAG- -5'
13946 3' -54 NC_003521.1 + 19079 0.69 0.93121
Target:  5'- cGCUGACGCUgucGUUCCGCUug--AUCa -3'
miRNA:   3'- aUGGCUGCGGa--CAAGGCGGugaaUAG- -5'
13946 3' -54 NC_003521.1 + 28574 0.69 0.93121
Target:  5'- gGCCG-CGCCgggGUcgCUGCCGCUgcUCu -3'
miRNA:   3'- aUGGCuGCGGa--CAa-GGCGGUGAauAG- -5'
13946 3' -54 NC_003521.1 + 32415 0.76 0.577696
Target:  5'- cGCgGGCGCCU--UCCGCCGCUUGg- -3'
miRNA:   3'- aUGgCUGCGGAcaAGGCGGUGAAUag -5'
13946 3' -54 NC_003521.1 + 32906 0.72 0.812368
Target:  5'- cGCCGuCGUCUGcgCCGCCGCg---- -3'
miRNA:   3'- aUGGCuGCGGACaaGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 38471 0.68 0.953733
Target:  5'- cAUCGGCGCCaucgUCCGCUACaucGUCg -3'
miRNA:   3'- aUGGCUGCGGaca-AGGCGGUGaa-UAG- -5'
13946 3' -54 NC_003521.1 + 46895 0.68 0.945419
Target:  5'- cGCCGACGCCgucuaCCGCCugGCUgaggacGUCg -3'
miRNA:   3'- aUGGCUGCGGacaa-GGCGG--UGAa-----UAG- -5'
13946 3' -54 NC_003521.1 + 52599 0.73 0.738516
Target:  5'- gGCCGugGgCCUGggUCCGCCGCc---- -3'
miRNA:   3'- aUGGCugC-GGACa-AGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 55197 0.67 0.961147
Target:  5'- gACCGGCGa-UGgcagUCCGCCGCgcuccGUCg -3'
miRNA:   3'- aUGGCUGCggACa---AGGCGGUGaa---UAG- -5'
13946 3' -54 NC_003521.1 + 56015 0.7 0.883023
Target:  5'- gGCCG-CGCCUGUcgCUGCCGCc---- -3'
miRNA:   3'- aUGGCuGCGGACAa-GGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 59869 0.69 0.908971
Target:  5'- cGCCGGgGCCg---CCGCCACUa--- -3'
miRNA:   3'- aUGGCUgCGGacaaGGCGGUGAauag -5'
13946 3' -54 NC_003521.1 + 60168 0.69 0.914883
Target:  5'- cGCCaACGCCUGgagCCGCUACa---- -3'
miRNA:   3'- aUGGcUGCGGACaa-GGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 62112 0.66 0.980575
Target:  5'- gACaGGCGCCgcgGUUCCGCgGCg---- -3'
miRNA:   3'- aUGgCUGCGGa--CAAGGCGgUGaauag -5'
13946 3' -54 NC_003521.1 + 63302 0.67 0.97342
Target:  5'- gGCCGACgggGCCUG-UCCGCUGgUgggcGUCg -3'
miRNA:   3'- aUGGCUG---CGGACaAGGCGGUgAa---UAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.