miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13946 3' -54 NC_003521.1 + 63302 0.67 0.97342
Target:  5'- gGCCGACgggGCCUG-UCCGCUGgUgggcGUCg -3'
miRNA:   3'- aUGGCUG---CGGACaAGGCGGUgAa---UAG- -5'
13946 3' -54 NC_003521.1 + 92280 0.67 0.970658
Target:  5'- cACCGcCGCCg---CCGCCGCgccUCg -3'
miRNA:   3'- aUGGCuGCGGacaaGGCGGUGaauAG- -5'
13946 3' -54 NC_003521.1 + 73408 0.67 0.967695
Target:  5'- aGgCGGCGCCg---CCGCCGCUg--- -3'
miRNA:   3'- aUgGCUGCGGacaaGGCGGUGAauag -5'
13946 3' -54 NC_003521.1 + 233082 0.67 0.967695
Target:  5'- cUGCCGcCGCC---UCCGCCGCUc--- -3'
miRNA:   3'- -AUGGCuGCGGacaAGGCGGUGAauag -5'
13946 3' -54 NC_003521.1 + 127655 0.67 0.964527
Target:  5'- gACCacCGCCUGUggCCGCC-CUUcAUCa -3'
miRNA:   3'- aUGGcuGCGGACAa-GGCGGuGAA-UAG- -5'
13946 3' -54 NC_003521.1 + 137313 0.67 0.961147
Target:  5'- gGCCGGgcggUGCCUGagucagCCGCCGgUUAUUg -3'
miRNA:   3'- aUGGCU----GCGGACaa----GGCGGUgAAUAG- -5'
13946 3' -54 NC_003521.1 + 89444 0.67 0.961147
Target:  5'- cGCCGGC-CCgg-UUCGCCGCUcGUCu -3'
miRNA:   3'- aUGGCUGcGGacaAGGCGGUGAaUAG- -5'
13946 3' -54 NC_003521.1 + 55197 0.67 0.961147
Target:  5'- gACCGGCGa-UGgcagUCCGCCGCgcuccGUCg -3'
miRNA:   3'- aUGGCUGCggACa---AGGCGGUGaa---UAG- -5'
13946 3' -54 NC_003521.1 + 74606 0.67 0.957551
Target:  5'- gGCCGgcGCGCCUcg-CCGCCGCg---- -3'
miRNA:   3'- aUGGC--UGCGGAcaaGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 133445 0.68 0.953733
Target:  5'- -cCCGAuCGCCgaggCCGCCACUgcuggUGUCc -3'
miRNA:   3'- auGGCU-GCGGacaaGGCGGUGA-----AUAG- -5'
13946 3' -54 NC_003521.1 + 38471 0.68 0.953733
Target:  5'- cAUCGGCGCCaucgUCCGCUACaucGUCg -3'
miRNA:   3'- aUGGCUGCGGaca-AGGCGGUGaa-UAG- -5'
13946 3' -54 NC_003521.1 + 114710 0.68 0.94969
Target:  5'- gGCUGACGUucucgcggguCUGgugCCGCCACagGUCu -3'
miRNA:   3'- aUGGCUGCG----------GACaa-GGCGGUGaaUAG- -5'
13946 3' -54 NC_003521.1 + 137067 0.68 0.94969
Target:  5'- -cCCGGCcCCUGcugucUUCCGCCACUacAUCu -3'
miRNA:   3'- auGGCUGcGGAC-----AAGGCGGUGAa-UAG- -5'
13946 3' -54 NC_003521.1 + 77974 0.68 0.945419
Target:  5'- cGCCGuCGCCaacaacgCCGCCACggcUGUCu -3'
miRNA:   3'- aUGGCuGCGGacaa---GGCGGUGa--AUAG- -5'
13946 3' -54 NC_003521.1 + 46895 0.68 0.945419
Target:  5'- cGCCGACGCCgucuaCCGCCugGCUgaggacGUCg -3'
miRNA:   3'- aUGGCUGCGGacaa-GGCGG--UGAa-----UAG- -5'
13946 3' -54 NC_003521.1 + 18703 0.68 0.944979
Target:  5'- gGCCGGCGCgauccggCUGUggCUGCCGCUgg-Cg -3'
miRNA:   3'- aUGGCUGCG-------GACAa-GGCGGUGAauaG- -5'
13946 3' -54 NC_003521.1 + 218345 0.68 0.940917
Target:  5'- cACCGGCGCCg---CCGCCucGCUgugcuUCg -3'
miRNA:   3'- aUGGCUGCGGacaaGGCGG--UGAau---AG- -5'
13946 3' -54 NC_003521.1 + 162642 0.68 0.936181
Target:  5'- -uCCGcACGCC-GUUUCGCCAUggAUCc -3'
miRNA:   3'- auGGC-UGCGGaCAAGGCGGUGaaUAG- -5'
13946 3' -54 NC_003521.1 + 203798 0.68 0.936181
Target:  5'- cGCCGACGaggacuCCUGUcgguccugacUCCGCCGCg---- -3'
miRNA:   3'- aUGGCUGC------GGACA----------AGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 19079 0.69 0.93121
Target:  5'- cGCUGACGCUgucGUUCCGCUug--AUCa -3'
miRNA:   3'- aUGGCUGCGGa--CAAGGCGGugaaUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.