Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 16809 | 1.1 | 0.015587 |
Target: 5'- cUCGCUUAAAAAGCCCGUGGAGCUUCAa -3' miRNA: 3'- -AGCGAAUUUUUCGGGCACCUCGAAGU- -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 22808 | 0.67 | 0.998565 |
Target: 5'- gUGUUgacGGGAGCCCGUgGGAGCcggcgUCGa -3' miRNA: 3'- aGCGAau-UUUUCGGGCA-CCUCGa----AGU- -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 31097 | 0.71 | 0.984134 |
Target: 5'- gUCGC--AAGgcGCCCGUGGAGUUcgCGg -3' miRNA: 3'- -AGCGaaUUUuuCGGGCACCUCGAa-GU- -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 33269 | 0.77 | 0.827516 |
Target: 5'- -aGCUggccGAGAGCCUGcGGGGCUUCAu -3' miRNA: 3'- agCGAau--UUUUCGGGCaCCUCGAAGU- -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 44481 | 0.66 | 0.999579 |
Target: 5'- -aGCUUGAGcAGCCCGUugaGGAuGCgcgUCc -3' miRNA: 3'- agCGAAUUUuUCGGGCA---CCU-CGa--AGu -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 56914 | 0.69 | 0.995974 |
Target: 5'- -aGCggGAGGugcaccGGCCCGUGGugcGCUUCu -3' miRNA: 3'- agCGaaUUUU------UCGGGCACCu--CGAAGu -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 59214 | 0.69 | 0.99453 |
Target: 5'- uUCGCgccAGAGGGCCUGgUGGAG-UUCGa -3' miRNA: 3'- -AGCGaa-UUUUUCGGGC-ACCUCgAAGU- -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 63650 | 0.67 | 0.998965 |
Target: 5'- aCGCgcaaccccguGCCCGUGaaccaGAGCUUCGu -3' miRNA: 3'- aGCGaauuuuu---CGGGCAC-----CUCGAAGU- -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 66007 | 0.67 | 0.998814 |
Target: 5'- gUCGCUgcugGAGAAcCCCGUGuGGGCg--- -3' miRNA: 3'- -AGCGAa---UUUUUcGGGCAC-CUCGaagu -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 68696 | 0.66 | 0.999664 |
Target: 5'- gCGgUUGAGGGGCgCCGgcGGAGCcgUCGc -3' miRNA: 3'- aGCgAAUUUUUCG-GGCa-CCUCGa-AGU- -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 73692 | 0.69 | 0.99453 |
Target: 5'- gCGCUgcucAAGAGCuUCGUGGAGCg--- -3' miRNA: 3'- aGCGAau--UUUUCG-GGCACCUCGaagu -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 85986 | 0.66 | 0.999664 |
Target: 5'- gCGCUgcAGGAGCagggCGUGGAGgaCUUCu -3' miRNA: 3'- aGCGAauUUUUCGg---GCACCUC--GAAGu -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 93228 | 0.67 | 0.999202 |
Target: 5'- gUUGC-UGGGGGGCCCGaUGGuGCUg-- -3' miRNA: 3'- -AGCGaAUUUUUCGGGC-ACCuCGAagu -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 99900 | 0.66 | 0.999579 |
Target: 5'- gUCGUgcgggUUGAccgguAGCCCGUGGAGguagugguaCUUCAu -3' miRNA: 3'- -AGCG-----AAUUuu---UCGGGCACCUC---------GAAGU- -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 100143 | 0.67 | 0.999202 |
Target: 5'- cUGCg--GGAAGgCCGUGGGGCUc-- -3' miRNA: 3'- aGCGaauUUUUCgGGCACCUCGAagu -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 101395 | 0.72 | 0.969511 |
Target: 5'- cCGCUUGacggccacgcagGAGAGCCCGUGcGGCUg-- -3' miRNA: 3'- aGCGAAU------------UUUUCGGGCACcUCGAagu -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 101583 | 0.66 | 0.999569 |
Target: 5'- cCGCgcGAGGAGCCCcguacagGUGGuAGCU-CAg -3' miRNA: 3'- aGCGaaUUUUUCGGG-------CACC-UCGAaGU- -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 118265 | 0.68 | 0.998275 |
Target: 5'- gCGCUU---GAGCUCGUGGAugGCgUCGc -3' miRNA: 3'- aGCGAAuuuUUCGGGCACCU--CGaAGU- -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 119971 | 0.67 | 0.999351 |
Target: 5'- cCGCU---GAGGCugguggacgCCGUGGAGCUg-- -3' miRNA: 3'- aGCGAauuUUUCG---------GGCACCUCGAagu -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 137439 | 0.74 | 0.915983 |
Target: 5'- gCGCgc-AGGAGCCCGUGGAGgUaUCGc -3' miRNA: 3'- aGCGaauUUUUCGGGCACCUCgA-AGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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