Results 1 - 20 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13948 | 3' | -59.6 | NC_003521.1 | + | 227121 | 0.66 | 0.810887 |
Target: 5'- -gCUGgaGCCCU--GAUGGGCcugcCCGGCg -3' miRNA: 3'- uaGACg-CGGGGuaUUACCCGc---GGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 24664 | 0.66 | 0.8509 |
Target: 5'- uUCUaUGCUCCGcGGgcccGGCGCCGGCu -3' miRNA: 3'- uAGAcGCGGGGUaUUac--CCGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 88902 | 0.66 | 0.819217 |
Target: 5'- cUCUGCGCCUCGc--UGGGCugugacCCGGa -3' miRNA: 3'- uAGACGCGGGGUauuACCCGc-----GGCCg -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 78532 | 0.66 | 0.843238 |
Target: 5'- cUCUcccCGuUCCCGUGAUGagacugugucGGCGCCGGUg -3' miRNA: 3'- uAGAc--GC-GGGGUAUUAC----------CCGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 66623 | 0.66 | 0.827389 |
Target: 5'- ---cGCGaCCCCAacGUGGGCGCgucGCa -3' miRNA: 3'- uagaCGC-GGGGUauUACCCGCGgc-CG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 163352 | 0.66 | 0.843238 |
Target: 5'- gAUCccCGCCUCAUGAaccgccagaaGGaGCGCCGGCc -3' miRNA: 3'- -UAGacGCGGGGUAUUa---------CC-CGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 170784 | 0.66 | 0.842462 |
Target: 5'- cGUCUugGCGCCCCAcgucccguUGGauccccaacaaguGaCGCCGGCa -3' miRNA: 3'- -UAGA--CGCGGGGUauu-----ACC-------------C-GCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 121031 | 0.66 | 0.810887 |
Target: 5'- -cCUG-GCCCCA--GUGGcagGCCGGCa -3' miRNA: 3'- uaGACgCGGGGUauUACCcg-CGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 173239 | 0.66 | 0.810887 |
Target: 5'- gAUCaUGgGCaUCAUGAUGGGCGUgggaGGCa -3' miRNA: 3'- -UAG-ACgCGgGGUAUUACCCGCGg---CCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 101162 | 0.66 | 0.840123 |
Target: 5'- gGUCUGCGUCCCucuccucagacGGCGuccgcgcCCGGCg -3' miRNA: 3'- -UAGACGCGGGGuauuac-----CCGC-------GGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 131029 | 0.66 | 0.819217 |
Target: 5'- cUCcaCGUCCCGUcuccUGGGCGgCGGCg -3' miRNA: 3'- uAGacGCGGGGUAuu--ACCCGCgGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 215179 | 0.66 | 0.819217 |
Target: 5'- gAUCUGcCGCCUgAUGucGUGGucacGCGCCaGCa -3' miRNA: 3'- -UAGAC-GCGGGgUAU--UACC----CGCGGcCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 127353 | 0.66 | 0.819217 |
Target: 5'- gAUCUGCacGCCCUcc-GUGGuGCG-CGGCa -3' miRNA: 3'- -UAGACG--CGGGGuauUACC-CGCgGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 222988 | 0.66 | 0.810887 |
Target: 5'- -cCUGCGCCCacuugGUAuggcgGUGGGggucgucgucCGCCGGUc -3' miRNA: 3'- uaGACGCGGGg----UAU-----UACCC----------GCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 85866 | 0.66 | 0.816734 |
Target: 5'- cUCUucGCGCCCUcgguggaguccgugGUGGUggugggGGGCGgCGGCg -3' miRNA: 3'- uAGA--CGCGGGG--------------UAUUA------CCCGCgGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 166491 | 0.66 | 0.835398 |
Target: 5'- ---aGCGCCauCCAgcg-GGGCGCCGcGUc -3' miRNA: 3'- uagaCGCGG--GGUauuaCCCGCGGC-CG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 127767 | 0.66 | 0.819217 |
Target: 5'- ---aGCGucuCCUCGUAGUcGGGCGgCGGCc -3' miRNA: 3'- uagaCGC---GGGGUAUUA-CCCGCgGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 116870 | 0.66 | 0.822505 |
Target: 5'- -cCUGCGCgCgCA--GUGGcgcggcugcggcggcGCGCCGGCg -3' miRNA: 3'- uaGACGCGgG-GUauUACC---------------CGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 191849 | 0.66 | 0.834605 |
Target: 5'- cUCaGCGCCUCGUcuaagauguugucGAuguccguccaacUGGGCGgCGGCg -3' miRNA: 3'- uAGaCGCGGGGUA-------------UU------------ACCCGCgGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 91100 | 0.66 | 0.819217 |
Target: 5'- cGUCUGCGCCugcgCCGgucgGGGauuccCCGGCa -3' miRNA: 3'- -UAGACGCGG----GGUauuaCCCgc---GGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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