miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 3' -59.6 NC_003521.1 + 17064 1.1 0.001702
Target:  5'- gAUCUGCGCCCCAUAAUGGGCGCCGGCa -3'
miRNA:   3'- -UAGACGCGGGGUAUUACCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 144500 0.86 0.076409
Target:  5'- gAUCUGCGCgCCCAUGAUGagcaggcaGGCGUCGGCg -3'
miRNA:   3'- -UAGACGCG-GGGUAUUAC--------CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 38466 0.84 0.101119
Target:  5'- cGUCUGgGCUCUGgcgGUGGGCGCCGGCg -3'
miRNA:   3'- -UAGACgCGGGGUau-UACCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 118918 0.78 0.237598
Target:  5'- cGUCgGCGCCgCGgcGUGGGCGgCGGCg -3'
miRNA:   3'- -UAGaCGCGGgGUauUACCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 109495 0.76 0.318721
Target:  5'- ---gGCGCUCCAgcgAGUGGucGCGCCGGCc -3'
miRNA:   3'- uagaCGCGGGGUa--UUACC--CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 74112 0.75 0.340169
Target:  5'- -aCUGCGCgacgCCCA---UGGGCGCCGuGCa -3'
miRNA:   3'- uaGACGCG----GGGUauuACCCGCGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 77610 0.75 0.340169
Target:  5'- cGUCaccggGCGCgCCCGUGAc-GGCGCCGGCc -3'
miRNA:   3'- -UAGa----CGCG-GGGUAUUacCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 153366 0.75 0.355039
Target:  5'- cGUCgcgcGCGCCCggcggCGUGGUGGGCcCCGGCc -3'
miRNA:   3'- -UAGa---CGCGGG-----GUAUUACCCGcGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 123434 0.75 0.362644
Target:  5'- -aCUGCGCCgCGaGAcGGuGCGCCGGCc -3'
miRNA:   3'- uaGACGCGGgGUaUUaCC-CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 218727 0.75 0.362644
Target:  5'- -aCUGCGCCCaCGgcGU-GGUGCCGGCc -3'
miRNA:   3'- uaGACGCGGG-GUauUAcCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 43247 0.75 0.370361
Target:  5'- cGUCUGCagGUCgUCG--GUGGGCGCCGGCg -3'
miRNA:   3'- -UAGACG--CGG-GGUauUACCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 238627 0.74 0.386129
Target:  5'- ---cGCGCCCCGcuAUGgguacgcgacGGCGCCGGCc -3'
miRNA:   3'- uagaCGCGGGGUauUAC----------CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 57576 0.74 0.402334
Target:  5'- ---cGCGCCUUcgA--GGGCGCCGGCg -3'
miRNA:   3'- uagaCGCGGGGuaUuaCCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 191285 0.74 0.402334
Target:  5'- -gCUGcCGCCCgaAUGGcUGGGCGCCGuGCa -3'
miRNA:   3'- uaGAC-GCGGGg-UAUU-ACCCGCGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 101470 0.73 0.430849
Target:  5'- --gUGCGCCUCGUAGUGGcGCGUgaggugcucgagcagCGGCg -3'
miRNA:   3'- uagACGCGGGGUAUUACC-CGCG---------------GCCG- -5'
13948 3' -59.6 NC_003521.1 + 149558 0.73 0.453436
Target:  5'- cGUCgucGCGCUCCAgcacguacuuGUGGGCGCCGacGCg -3'
miRNA:   3'- -UAGa--CGCGGGGUau--------UACCCGCGGC--CG- -5'
13948 3' -59.6 NC_003521.1 + 187238 0.73 0.462293
Target:  5'- uUCg--GCCaCCAgcAUGGGUGCCGGCg -3'
miRNA:   3'- uAGacgCGG-GGUauUACCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 76483 0.72 0.471241
Target:  5'- --gUGCGCgCCCAg---GGcGUGCCGGCg -3'
miRNA:   3'- uagACGCG-GGGUauuaCC-CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 113336 0.72 0.498592
Target:  5'- cGUCUGCGCCUCGUAGcccggaaGGUGCUGGa -3'
miRNA:   3'- -UAGACGCGGGGUAUUac-----CCGCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 73961 0.71 0.536108
Target:  5'- -gCUGCGCUCCAcgaagcucuUGAgcagcgccuUGGGCGCCucgGGCg -3'
miRNA:   3'- uaGACGCGGGGU---------AUU---------ACCCGCGG---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.