miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 3' -59.6 NC_003521.1 + 3676 0.69 0.682162
Target:  5'- gGUCUGagugGCCCCAUccccgGAUGccGGCGUCGGg -3'
miRNA:   3'- -UAGACg---CGGGGUA-----UUAC--CCGCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 3704 0.68 0.70152
Target:  5'- -cCUGUGCCCUc-----GGCGUCGGCa -3'
miRNA:   3'- uaGACGCGGGGuauuacCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 10775 0.67 0.793789
Target:  5'- uGUC-GCGCCgCC-UGggGGGCcacgccauccccGCCGGCg -3'
miRNA:   3'- -UAGaCGCGG-GGuAUuaCCCG------------CGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 17064 1.1 0.001702
Target:  5'- gAUCUGCGCCCCAUAAUGGGCGCCGGCa -3'
miRNA:   3'- -UAGACGCGGGGUAUUACCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 24664 0.66 0.8509
Target:  5'- uUCUaUGCUCCGcGGgcccGGCGCCGGCu -3'
miRNA:   3'- uAGAcGCGGGGUaUUac--CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 27792 0.68 0.739526
Target:  5'- cGUCUaCGCCaCC---GUGGGCGCCucgGGCc -3'
miRNA:   3'- -UAGAcGCGG-GGuauUACCCGCGG---CCG- -5'
13948 3' -59.6 NC_003521.1 + 34696 0.68 0.720663
Target:  5'- -cCUGCGCgUCGUAGgcgaagacGGCGCCGuGCg -3'
miRNA:   3'- uaGACGCGgGGUAUUac------CCGCGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 35168 0.68 0.711122
Target:  5'- -gCUGCGCUUCGa---GGGCGCCuGCg -3'
miRNA:   3'- uaGACGCGGGGUauuaCCCGCGGcCG- -5'
13948 3' -59.6 NC_003521.1 + 38466 0.84 0.101119
Target:  5'- cGUCUGgGCUCUGgcgGUGGGCGCCGGCg -3'
miRNA:   3'- -UAGACgCGGGGUau-UACCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 43247 0.75 0.370361
Target:  5'- cGUCUGCagGUCgUCG--GUGGGCGCCGGCg -3'
miRNA:   3'- -UAGACG--CGG-GGUauUACCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 49489 0.68 0.748833
Target:  5'- -aCUGCGa--CAUAcUGGGCGCCaGGUa -3'
miRNA:   3'- uaGACGCgggGUAUuACCCGCGG-CCG- -5'
13948 3' -59.6 NC_003521.1 + 53397 0.69 0.682162
Target:  5'- uUCUGCaGCUCCuugc-GGGCGUCGGg -3'
miRNA:   3'- uAGACG-CGGGGuauuaCCCGCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 54179 0.7 0.594033
Target:  5'- -cCUGaCGUCCaaggg-GGGCGCCGGUg -3'
miRNA:   3'- uaGAC-GCGGGguauuaCCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 54788 0.66 0.835398
Target:  5'- ---cGgGCCCCAgc---GGCGCCGuGCa -3'
miRNA:   3'- uagaCgCGGGGUauuacCCGCGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 54903 0.67 0.758045
Target:  5'- -gCUGCGCaCCGUuugcaGGaucaGCGCCGGCg -3'
miRNA:   3'- uaGACGCGgGGUAuua--CC----CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 55520 0.66 0.827389
Target:  5'- aGUUUGUcCCCCGc---GGGCucGCCGGCg -3'
miRNA:   3'- -UAGACGcGGGGUauuaCCCG--CGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 57576 0.74 0.402334
Target:  5'- ---cGCGCCUUcgA--GGGCGCCGGCg -3'
miRNA:   3'- uagaCGCGGGGuaUuaCCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 63073 0.69 0.682162
Target:  5'- ---cGCGaCCCCGUAcagcuGCGCCGGCg -3'
miRNA:   3'- uagaCGC-GGGGUAUuacc-CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 64265 0.66 0.819217
Target:  5'- -cCUGCaGCUCCucuagGGGCagaaaGCCGGCc -3'
miRNA:   3'- uaGACG-CGGGGuauuaCCCG-----CGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 66623 0.66 0.827389
Target:  5'- ---cGCGaCCCCAacGUGGGCGCgucGCa -3'
miRNA:   3'- uagaCGC-GGGGUauUACCCGCGgc-CG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.