Results 1 - 20 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13948 | 3' | -59.6 | NC_003521.1 | + | 3676 | 0.69 | 0.682162 |
Target: 5'- gGUCUGagugGCCCCAUccccgGAUGccGGCGUCGGg -3' miRNA: 3'- -UAGACg---CGGGGUA-----UUAC--CCGCGGCCg -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 3704 | 0.68 | 0.70152 |
Target: 5'- -cCUGUGCCCUc-----GGCGUCGGCa -3' miRNA: 3'- uaGACGCGGGGuauuacCCGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 10775 | 0.67 | 0.793789 |
Target: 5'- uGUC-GCGCCgCC-UGggGGGCcacgccauccccGCCGGCg -3' miRNA: 3'- -UAGaCGCGG-GGuAUuaCCCG------------CGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 17064 | 1.1 | 0.001702 |
Target: 5'- gAUCUGCGCCCCAUAAUGGGCGCCGGCa -3' miRNA: 3'- -UAGACGCGGGGUAUUACCCGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 24664 | 0.66 | 0.8509 |
Target: 5'- uUCUaUGCUCCGcGGgcccGGCGCCGGCu -3' miRNA: 3'- uAGAcGCGGGGUaUUac--CCGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 27792 | 0.68 | 0.739526 |
Target: 5'- cGUCUaCGCCaCC---GUGGGCGCCucgGGCc -3' miRNA: 3'- -UAGAcGCGG-GGuauUACCCGCGG---CCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 34696 | 0.68 | 0.720663 |
Target: 5'- -cCUGCGCgUCGUAGgcgaagacGGCGCCGuGCg -3' miRNA: 3'- uaGACGCGgGGUAUUac------CCGCGGC-CG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 35168 | 0.68 | 0.711122 |
Target: 5'- -gCUGCGCUUCGa---GGGCGCCuGCg -3' miRNA: 3'- uaGACGCGGGGUauuaCCCGCGGcCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 38466 | 0.84 | 0.101119 |
Target: 5'- cGUCUGgGCUCUGgcgGUGGGCGCCGGCg -3' miRNA: 3'- -UAGACgCGGGGUau-UACCCGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 43247 | 0.75 | 0.370361 |
Target: 5'- cGUCUGCagGUCgUCG--GUGGGCGCCGGCg -3' miRNA: 3'- -UAGACG--CGG-GGUauUACCCGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 49489 | 0.68 | 0.748833 |
Target: 5'- -aCUGCGa--CAUAcUGGGCGCCaGGUa -3' miRNA: 3'- uaGACGCgggGUAUuACCCGCGG-CCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 53397 | 0.69 | 0.682162 |
Target: 5'- uUCUGCaGCUCCuugc-GGGCGUCGGg -3' miRNA: 3'- uAGACG-CGGGGuauuaCCCGCGGCCg -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 54179 | 0.7 | 0.594033 |
Target: 5'- -cCUGaCGUCCaaggg-GGGCGCCGGUg -3' miRNA: 3'- uaGAC-GCGGGguauuaCCCGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 54788 | 0.66 | 0.835398 |
Target: 5'- ---cGgGCCCCAgc---GGCGCCGuGCa -3' miRNA: 3'- uagaCgCGGGGUauuacCCGCGGC-CG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 54903 | 0.67 | 0.758045 |
Target: 5'- -gCUGCGCaCCGUuugcaGGaucaGCGCCGGCg -3' miRNA: 3'- uaGACGCGgGGUAuua--CC----CGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 55520 | 0.66 | 0.827389 |
Target: 5'- aGUUUGUcCCCCGc---GGGCucGCCGGCg -3' miRNA: 3'- -UAGACGcGGGGUauuaCCCG--CGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 57576 | 0.74 | 0.402334 |
Target: 5'- ---cGCGCCUUcgA--GGGCGCCGGCg -3' miRNA: 3'- uagaCGCGGGGuaUuaCCCGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 63073 | 0.69 | 0.682162 |
Target: 5'- ---cGCGaCCCCGUAcagcuGCGCCGGCg -3' miRNA: 3'- uagaCGC-GGGGUAUuacc-CGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 64265 | 0.66 | 0.819217 |
Target: 5'- -cCUGCaGCUCCucuagGGGCagaaaGCCGGCc -3' miRNA: 3'- uaGACG-CGGGGuauuaCCCG-----CGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 66623 | 0.66 | 0.827389 |
Target: 5'- ---cGCGaCCCCAacGUGGGCGCgucGCa -3' miRNA: 3'- uagaCGC-GGGGUauUACCCGCGgc-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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