miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 3' -59.6 NC_003521.1 + 115655 0.69 0.672422
Target:  5'- uGUCgGCGCCCCAguggcgGGUGaagaaGGCGgCCaGGCg -3'
miRNA:   3'- -UAGaCGCGGGGUa-----UUAC-----CCGC-GG-CCG- -5'
13948 3' -59.6 NC_003521.1 + 149375 0.7 0.603811
Target:  5'- uGUCUGCGCCUCGUcacccccGUGGGCuucgugGCCguGGCc -3'
miRNA:   3'- -UAGACGCGGGGUAu------UACCCG------CGG--CCG- -5'
13948 3' -59.6 NC_003521.1 + 102584 0.7 0.613609
Target:  5'- -aCUGCGUCUCGgggcuGGCGCUGGCc -3'
miRNA:   3'- uaGACGCGGGGUauuacCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 223817 0.7 0.633236
Target:  5'- -cCUGCGCCgCCGccaccgcGGGCGCCuGCu -3'
miRNA:   3'- uaGACGCGG-GGUauua---CCCGCGGcCG- -5'
13948 3' -59.6 NC_003521.1 + 187465 0.7 0.634218
Target:  5'- gGUCUGUcgGCCCCuccgccgccGCGCCGGCg -3'
miRNA:   3'- -UAGACG--CGGGGuauuacc--CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 218015 0.69 0.643052
Target:  5'- -gCUGaugaaGaCCCCGUucuUGGGCGgCGGCg -3'
miRNA:   3'- uaGACg----C-GGGGUAuu-ACCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 224429 0.69 0.643052
Target:  5'- ---gGCGCUgCGUGGUGGGCGagCGGUc -3'
miRNA:   3'- uagaCGCGGgGUAUUACCCGCg-GCCG- -5'
13948 3' -59.6 NC_003521.1 + 137460 0.69 0.662652
Target:  5'- uAUC-GCGCaCCGacgAGUggaaGGGCGCCGGCg -3'
miRNA:   3'- -UAGaCGCGgGGUa--UUA----CCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 76195 0.69 0.672422
Target:  5'- ---gGCGCCaCAgGAUGGGCcagaagcccGCCGGCa -3'
miRNA:   3'- uagaCGCGGgGUaUUACCCG---------CGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 103873 0.7 0.594033
Target:  5'- gAUCaGCGCCgaCAggggGAUGGGCuGCCGcGCg -3'
miRNA:   3'- -UAGaCGCGGg-GUa---UUACCCG-CGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 223385 0.71 0.564876
Target:  5'- cAUCgcgGCGCCCCGacgcgggccGUGuGGCGCCccGGCg -3'
miRNA:   3'- -UAGa--CGCGGGGUau-------UAC-CCGCGG--CCG- -5'
13948 3' -59.6 NC_003521.1 + 112454 0.71 0.564876
Target:  5'- ---gGCGgCCC-UGGUGGGCGCgccCGGCg -3'
miRNA:   3'- uagaCGCgGGGuAUUACCCGCG---GCCG- -5'
13948 3' -59.6 NC_003521.1 + 118918 0.78 0.237598
Target:  5'- cGUCgGCGCCgCGgcGUGGGCGgCGGCg -3'
miRNA:   3'- -UAGaCGCGGgGUauUACCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 109495 0.76 0.318721
Target:  5'- ---gGCGCUCCAgcgAGUGGucGCGCCGGCc -3'
miRNA:   3'- uagaCGCGGGGUa--UUACC--CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 74112 0.75 0.340169
Target:  5'- -aCUGCGCgacgCCCA---UGGGCGCCGuGCa -3'
miRNA:   3'- uaGACGCG----GGGUauuACCCGCGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 77610 0.75 0.340169
Target:  5'- cGUCaccggGCGCgCCCGUGAc-GGCGCCGGCc -3'
miRNA:   3'- -UAGa----CGCG-GGGUAUUacCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 57576 0.74 0.402334
Target:  5'- ---cGCGCCUUcgA--GGGCGCCGGCg -3'
miRNA:   3'- uagaCGCGGGGuaUuaCCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 101470 0.73 0.430849
Target:  5'- --gUGCGCCUCGUAGUGGcGCGUgaggugcucgagcagCGGCg -3'
miRNA:   3'- uagACGCGGGGUAUUACC-CGCG---------------GCCG- -5'
13948 3' -59.6 NC_003521.1 + 187238 0.73 0.462293
Target:  5'- uUCg--GCCaCCAgcAUGGGUGCCGGCg -3'
miRNA:   3'- uAGacgCGG-GGUauUACCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 103204 0.71 0.545645
Target:  5'- ---aGCGCUCCAUgaccugGAUGaGGuCGCCGGCc -3'
miRNA:   3'- uagaCGCGGGGUA------UUAC-CC-GCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.