miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 5' -55.7 NC_003521.1 + 81797 0.66 0.941667
Target:  5'- --cUCGACCaUGCUGUAguUGGCGAucaGGUa -3'
miRNA:   3'- uuuGGCUGG-ACGACGU--ACCGCU---UCGc -5'
13948 5' -55.7 NC_003521.1 + 219358 0.66 0.936994
Target:  5'- uAGGCCG-CCaGCUGCAcgccGUGAAGCGc -3'
miRNA:   3'- -UUUGGCuGGaCGACGUac--CGCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 33556 0.66 0.936994
Target:  5'- cGGCCGGCCUGaC-GCA-GGCacgaGAAGCGc -3'
miRNA:   3'- uUUGGCUGGAC-GaCGUaCCG----CUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 103032 0.66 0.949084
Target:  5'- uAGCCGuACCcagacaugcgcaggUGCUGCAgacagGGCGGGuGCGc -3'
miRNA:   3'- uUUGGC-UGG--------------ACGACGUa----CCGCUU-CGC- -5'
13948 5' -55.7 NC_003521.1 + 63992 0.66 0.938891
Target:  5'- uGGCCGGCUUucugccccuagaggaGCUGCA-GGCGcugGAGCGc -3'
miRNA:   3'- uUUGGCUGGA---------------CGACGUaCCGC---UUCGC- -5'
13948 5' -55.7 NC_003521.1 + 141444 0.66 0.941667
Target:  5'- uGGACCG-CCucagagaggUGCUGCAggugGuGCGAAGCc -3'
miRNA:   3'- -UUUGGCuGG---------ACGACGUa---C-CGCUUCGc -5'
13948 5' -55.7 NC_003521.1 + 155383 0.66 0.941667
Target:  5'- --uUCGACCUGCccgucuauUGCGUGGUcaacGAGCGc -3'
miRNA:   3'- uuuGGCUGGACG--------ACGUACCGc---UUCGC- -5'
13948 5' -55.7 NC_003521.1 + 100202 0.66 0.941667
Target:  5'- cGGCCGugUaccGCUGCAggucguaggccGGCGAGGUGg -3'
miRNA:   3'- uUUGGCugGa--CGACGUa----------CCGCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 152350 0.66 0.941667
Target:  5'- -cGCCGACgCUGCUcugggGCcgGcCGggGCGg -3'
miRNA:   3'- uuUGGCUG-GACGA-----CGuaCcGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 150234 0.66 0.958078
Target:  5'- --cCCGugCUGCUGCugaccacGGcCGAGGgGg -3'
miRNA:   3'- uuuGGCugGACGACGua-----CC-GCUUCgC- -5'
13948 5' -55.7 NC_003521.1 + 59345 0.66 0.958078
Target:  5'- uGAGCCacGCCacGCUGCA-GGCGgcGCGc -3'
miRNA:   3'- -UUUGGc-UGGa-CGACGUaCCGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 166117 0.66 0.958078
Target:  5'- -cGCgGGCCUGCUuCAgGGCGGccGGCa -3'
miRNA:   3'- uuUGgCUGGACGAcGUaCCGCU--UCGc -5'
13948 5' -55.7 NC_003521.1 + 145025 0.66 0.941667
Target:  5'- -cGCCGACgC-GCUggaucGCGUGGCcGAGCGg -3'
miRNA:   3'- uuUGGCUG-GaCGA-----CGUACCGcUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 232555 0.66 0.954312
Target:  5'- uGGCCuacuacggGGgCUGCUGUGUGGUG-AGCGg -3'
miRNA:   3'- uUUGG--------CUgGACGACGUACCGCuUCGC- -5'
13948 5' -55.7 NC_003521.1 + 87876 0.66 0.94611
Target:  5'- -cGCUGGCCagGCcGU-UGGCGAAGUGg -3'
miRNA:   3'- uuUGGCUGGa-CGaCGuACCGCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 240554 0.66 0.958078
Target:  5'- --uCCGGCCUccGCUGCGggucccggggggUGGgGggGUGu -3'
miRNA:   3'- uuuGGCUGGA--CGACGU------------ACCgCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 73115 0.66 0.949913
Target:  5'- -cACCGugGCCacggaggUGCUGCAcGGCGGgggcAGCGg -3'
miRNA:   3'- uuUGGC--UGG-------ACGACGUaCCGCU----UCGC- -5'
13948 5' -55.7 NC_003521.1 + 87746 0.66 0.950324
Target:  5'- gAAGCCcgaGACCaGCUGCGgacaggUGGCGcAGGCc -3'
miRNA:   3'- -UUUGG---CUGGaCGACGU------ACCGC-UUCGc -5'
13948 5' -55.7 NC_003521.1 + 54998 0.66 0.958078
Target:  5'- uGGCCGACUUGUaggGCuuaaGGCGcAGCGc -3'
miRNA:   3'- uUUGGCUGGACGa--CGua--CCGCuUCGC- -5'
13948 5' -55.7 NC_003521.1 + 5 0.66 0.958078
Target:  5'- --uCCGGCCUccGCUGCGggucccggggggUGGgGggGUGu -3'
miRNA:   3'- uuuGGCUGGA--CGACGU------------ACCgCuuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.