miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 5' -55.7 NC_003521.1 + 5 0.66 0.958078
Target:  5'- --uCCGGCCUccGCUGCGggucccggggggUGGgGggGUGu -3'
miRNA:   3'- uuuGGCUGGA--CGACGU------------ACCgCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 1069 0.68 0.891245
Target:  5'- cGACCGACCaucgGCG-GGCGAGGCc -3'
miRNA:   3'- uUUGGCUGGacgaCGUaCCGCUUCGc -5'
13948 5' -55.7 NC_003521.1 + 17029 1.06 0.00687
Target:  5'- aAAACCGACCUGCUGCAUGGCGAAGCGc -3'
miRNA:   3'- -UUUGGCUGGACGACGUACCGCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 18714 0.68 0.891245
Target:  5'- --uCCGGCUgugGCUGCcgcUGGCGGcGGCGa -3'
miRNA:   3'- uuuGGCUGGa--CGACGu--ACCGCU-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 19679 0.66 0.954312
Target:  5'- -uGCCGGCUgcaGUUGUugucGGCGAGGCu -3'
miRNA:   3'- uuUGGCUGGa--CGACGua--CCGCUUCGc -5'
13948 5' -55.7 NC_003521.1 + 30896 0.7 0.805942
Target:  5'- aGGGCCGAgCUGaaCUGCGgcaGGCGAgAGCGg -3'
miRNA:   3'- -UUUGGCUgGAC--GACGUa--CCGCU-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 33516 0.7 0.814612
Target:  5'- -cGCCGGCCUGCUGgCGUGuGCc-AGCu -3'
miRNA:   3'- uuUGGCUGGACGAC-GUAC-CGcuUCGc -5'
13948 5' -55.7 NC_003521.1 + 33556 0.66 0.936994
Target:  5'- cGGCCGGCCUGaC-GCA-GGCacgaGAAGCGc -3'
miRNA:   3'- uUUGGCUGGAC-GaCGUaCCG----CUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 33886 0.68 0.87036
Target:  5'- ---aCGGCCUGUUGCugGGCGAcAGCa -3'
miRNA:   3'- uuugGCUGGACGACGuaCCGCU-UCGc -5'
13948 5' -55.7 NC_003521.1 + 35179 0.68 0.877537
Target:  5'- -cGCCGcuACCUGCUGCGcuucgagGGCGccuGCGu -3'
miRNA:   3'- uuUGGC--UGGACGACGUa------CCGCuu-CGC- -5'
13948 5' -55.7 NC_003521.1 + 35217 0.7 0.82312
Target:  5'- uGGCCGACCU-CUGCGUG-CGccGCGa -3'
miRNA:   3'- uUUGGCUGGAcGACGUACcGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 36326 0.68 0.897768
Target:  5'- -cGCCGcCCUGUUGUGUcGGCGGcgGGCu -3'
miRNA:   3'- uuUGGCuGGACGACGUA-CCGCU--UCGc -5'
13948 5' -55.7 NC_003521.1 + 36834 0.68 0.891245
Target:  5'- cGGGCCGGCgCUGCugUGCcgGGUaGAGCa -3'
miRNA:   3'- -UUUGGCUG-GACG--ACGuaCCGcUUCGc -5'
13948 5' -55.7 NC_003521.1 + 37412 0.66 0.94611
Target:  5'- -cACgGGCCUGaCcGUGUGGCGcGGCGc -3'
miRNA:   3'- uuUGgCUGGAC-GaCGUACCGCuUCGC- -5'
13948 5' -55.7 NC_003521.1 + 42259 0.68 0.891908
Target:  5'- -cGCCGugUUGCUGCugcgaccuuaagaaGGCGcGGCGg -3'
miRNA:   3'- uuUGGCugGACGACGua------------CCGCuUCGC- -5'
13948 5' -55.7 NC_003521.1 + 43108 0.67 0.921577
Target:  5'- cGAGCUGACCaagcGCUGC--GGCG-AGCGc -3'
miRNA:   3'- -UUUGGCUGGa---CGACGuaCCGCuUCGC- -5'
13948 5' -55.7 NC_003521.1 + 44077 0.67 0.910134
Target:  5'- cGGCUGACCcgGCUGCu--GCGAcauGGCGg -3'
miRNA:   3'- uUUGGCUGGa-CGACGuacCGCU---UCGC- -5'
13948 5' -55.7 NC_003521.1 + 44508 0.74 0.571522
Target:  5'- cAACCGGCCcaugcGCUGCAUGGCcagcaucAAGCGg -3'
miRNA:   3'- uUUGGCUGGa----CGACGUACCGc------UUCGC- -5'
13948 5' -55.7 NC_003521.1 + 44706 0.73 0.662258
Target:  5'- -cACCG-CCUcCUGCGUGGUGAagGGCGg -3'
miRNA:   3'- uuUGGCuGGAcGACGUACCGCU--UCGC- -5'
13948 5' -55.7 NC_003521.1 + 47910 0.66 0.936994
Target:  5'- gGAGCCGGCg-GgaGC--GGCGGAGCGu -3'
miRNA:   3'- -UUUGGCUGgaCgaCGuaCCGCUUCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.