Results 1 - 20 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13948 | 5' | -55.7 | NC_003521.1 | + | 5 | 0.66 | 0.958078 |
Target: 5'- --uCCGGCCUccGCUGCGggucccggggggUGGgGggGUGu -3' miRNA: 3'- uuuGGCUGGA--CGACGU------------ACCgCuuCGC- -5' |
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13948 | 5' | -55.7 | NC_003521.1 | + | 1069 | 0.68 | 0.891245 |
Target: 5'- cGACCGACCaucgGCG-GGCGAGGCc -3' miRNA: 3'- uUUGGCUGGacgaCGUaCCGCUUCGc -5' |
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13948 | 5' | -55.7 | NC_003521.1 | + | 17029 | 1.06 | 0.00687 |
Target: 5'- aAAACCGACCUGCUGCAUGGCGAAGCGc -3' miRNA: 3'- -UUUGGCUGGACGACGUACCGCUUCGC- -5' |
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13948 | 5' | -55.7 | NC_003521.1 | + | 18714 | 0.68 | 0.891245 |
Target: 5'- --uCCGGCUgugGCUGCcgcUGGCGGcGGCGa -3' miRNA: 3'- uuuGGCUGGa--CGACGu--ACCGCU-UCGC- -5' |
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13948 | 5' | -55.7 | NC_003521.1 | + | 19679 | 0.66 | 0.954312 |
Target: 5'- -uGCCGGCUgcaGUUGUugucGGCGAGGCu -3' miRNA: 3'- uuUGGCUGGa--CGACGua--CCGCUUCGc -5' |
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13948 | 5' | -55.7 | NC_003521.1 | + | 30896 | 0.7 | 0.805942 |
Target: 5'- aGGGCCGAgCUGaaCUGCGgcaGGCGAgAGCGg -3' miRNA: 3'- -UUUGGCUgGAC--GACGUa--CCGCU-UCGC- -5' |
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13948 | 5' | -55.7 | NC_003521.1 | + | 33516 | 0.7 | 0.814612 |
Target: 5'- -cGCCGGCCUGCUGgCGUGuGCc-AGCu -3' miRNA: 3'- uuUGGCUGGACGAC-GUAC-CGcuUCGc -5' |
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13948 | 5' | -55.7 | NC_003521.1 | + | 33556 | 0.66 | 0.936994 |
Target: 5'- cGGCCGGCCUGaC-GCA-GGCacgaGAAGCGc -3' miRNA: 3'- uUUGGCUGGAC-GaCGUaCCG----CUUCGC- -5' |
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13948 | 5' | -55.7 | NC_003521.1 | + | 33886 | 0.68 | 0.87036 |
Target: 5'- ---aCGGCCUGUUGCugGGCGAcAGCa -3' miRNA: 3'- uuugGCUGGACGACGuaCCGCU-UCGc -5' |
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13948 | 5' | -55.7 | NC_003521.1 | + | 35179 | 0.68 | 0.877537 |
Target: 5'- -cGCCGcuACCUGCUGCGcuucgagGGCGccuGCGu -3' miRNA: 3'- uuUGGC--UGGACGACGUa------CCGCuu-CGC- -5' |
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13948 | 5' | -55.7 | NC_003521.1 | + | 35217 | 0.7 | 0.82312 |
Target: 5'- uGGCCGACCU-CUGCGUG-CGccGCGa -3' miRNA: 3'- uUUGGCUGGAcGACGUACcGCuuCGC- -5' |
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13948 | 5' | -55.7 | NC_003521.1 | + | 36326 | 0.68 | 0.897768 |
Target: 5'- -cGCCGcCCUGUUGUGUcGGCGGcgGGCu -3' miRNA: 3'- uuUGGCuGGACGACGUA-CCGCU--UCGc -5' |
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13948 | 5' | -55.7 | NC_003521.1 | + | 36834 | 0.68 | 0.891245 |
Target: 5'- cGGGCCGGCgCUGCugUGCcgGGUaGAGCa -3' miRNA: 3'- -UUUGGCUG-GACG--ACGuaCCGcUUCGc -5' |
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13948 | 5' | -55.7 | NC_003521.1 | + | 37412 | 0.66 | 0.94611 |
Target: 5'- -cACgGGCCUGaCcGUGUGGCGcGGCGc -3' miRNA: 3'- uuUGgCUGGAC-GaCGUACCGCuUCGC- -5' |
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13948 | 5' | -55.7 | NC_003521.1 | + | 42259 | 0.68 | 0.891908 |
Target: 5'- -cGCCGugUUGCUGCugcgaccuuaagaaGGCGcGGCGg -3' miRNA: 3'- uuUGGCugGACGACGua------------CCGCuUCGC- -5' |
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13948 | 5' | -55.7 | NC_003521.1 | + | 43108 | 0.67 | 0.921577 |
Target: 5'- cGAGCUGACCaagcGCUGC--GGCG-AGCGc -3' miRNA: 3'- -UUUGGCUGGa---CGACGuaCCGCuUCGC- -5' |
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13948 | 5' | -55.7 | NC_003521.1 | + | 44077 | 0.67 | 0.910134 |
Target: 5'- cGGCUGACCcgGCUGCu--GCGAcauGGCGg -3' miRNA: 3'- uUUGGCUGGa-CGACGuacCGCU---UCGC- -5' |
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13948 | 5' | -55.7 | NC_003521.1 | + | 44508 | 0.74 | 0.571522 |
Target: 5'- cAACCGGCCcaugcGCUGCAUGGCcagcaucAAGCGg -3' miRNA: 3'- uUUGGCUGGa----CGACGUACCGc------UUCGC- -5' |
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13948 | 5' | -55.7 | NC_003521.1 | + | 44706 | 0.73 | 0.662258 |
Target: 5'- -cACCG-CCUcCUGCGUGGUGAagGGCGg -3' miRNA: 3'- uuUGGCuGGAcGACGUACCGCU--UCGC- -5' |
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13948 | 5' | -55.7 | NC_003521.1 | + | 47910 | 0.66 | 0.936994 |
Target: 5'- gGAGCCGGCg-GgaGC--GGCGGAGCGu -3' miRNA: 3'- -UUUGGCUGgaCgaCGuaCCGCUUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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