miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 5' -55.7 NC_003521.1 + 1069 0.68 0.891245
Target:  5'- cGACCGACCaucgGCG-GGCGAGGCc -3'
miRNA:   3'- uUUGGCUGGacgaCGUaCCGCUUCGc -5'
13948 5' -55.7 NC_003521.1 + 129913 0.69 0.862974
Target:  5'- cGGCCGcgcGCCUGCUGCGcgaacaccUGGcCGAgacGGCGc -3'
miRNA:   3'- uUUGGC---UGGACGACGU--------ACC-GCU---UCGC- -5'
13948 5' -55.7 NC_003521.1 + 63945 0.69 0.862974
Target:  5'- cAACCGGCUgagcguggaGCUGC-UGGCGcGGCGc -3'
miRNA:   3'- uUUGGCUGGa--------CGACGuACCGCuUCGC- -5'
13948 5' -55.7 NC_003521.1 + 120948 0.68 0.87036
Target:  5'- --uCCGGCgaGggGCAgggGGCGggGCGg -3'
miRNA:   3'- uuuGGCUGgaCgaCGUa--CCGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 215956 0.68 0.877537
Target:  5'- -cACCaugagGACCUGCUGCGagaGGUGGccGGCGa -3'
miRNA:   3'- uuUGG-----CUGGACGACGUa--CCGCU--UCGC- -5'
13948 5' -55.7 NC_003521.1 + 118734 0.68 0.877537
Target:  5'- -cACCGGCacggGCUGCAgguugcUGGUGAgucGGCGg -3'
miRNA:   3'- uuUGGCUGga--CGACGU------ACCGCU---UCGC- -5'
13948 5' -55.7 NC_003521.1 + 149018 0.68 0.883814
Target:  5'- cAGACCGACCccaGCgGCGUGGagauucuCGAGGCc -3'
miRNA:   3'- -UUUGGCUGGa--CGaCGUACC-------GCUUCGc -5'
13948 5' -55.7 NC_003521.1 + 18714 0.68 0.891245
Target:  5'- --uCCGGCUgugGCUGCcgcUGGCGGcGGCGa -3'
miRNA:   3'- uuuGGCUGGa--CGACGu--ACCGCU-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 36834 0.68 0.891245
Target:  5'- cGGGCCGGCgCUGCugUGCcgGGUaGAGCa -3'
miRNA:   3'- -UUUGGCUG-GACG--ACGuaCCGcUUCGc -5'
13948 5' -55.7 NC_003521.1 + 64760 0.69 0.847598
Target:  5'- -cGCCGGCCgGCgcgGCAccgGGCGAucccaAGCGc -3'
miRNA:   3'- uuUGGCUGGaCGa--CGUa--CCGCU-----UCGC- -5'
13948 5' -55.7 NC_003521.1 + 220520 0.69 0.831459
Target:  5'- uGGCCu-CCuggUGCUGCAUGGCGccGGCGa -3'
miRNA:   3'- uUUGGcuGG---ACGACGUACCGCu-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 239792 0.7 0.805942
Target:  5'- -cGCCGGCCaucugGCUGCGcGGCGugauGCGc -3'
miRNA:   3'- uuUGGCUGGa----CGACGUaCCGCuu--CGC- -5'
13948 5' -55.7 NC_003521.1 + 224420 0.78 0.370513
Target:  5'- -cGCCGGCCaggcGCUGCGUGGUGGgcgAGCGg -3'
miRNA:   3'- uuUGGCUGGa---CGACGUACCGCU---UCGC- -5'
13948 5' -55.7 NC_003521.1 + 44508 0.74 0.571522
Target:  5'- cAACCGGCCcaugcGCUGCAUGGCcagcaucAAGCGg -3'
miRNA:   3'- uUUGGCUGGa----CGACGUACCGc------UUCGC- -5'
13948 5' -55.7 NC_003521.1 + 98403 0.74 0.585539
Target:  5'- ---gCGGCgCUGCUGCuguuauuguccggugGUGGCGggGCGg -3'
miRNA:   3'- uuugGCUG-GACGACG---------------UACCGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 149819 0.73 0.621833
Target:  5'- uGACCGACCUGCUGCAgcuGCaacAGCa -3'
miRNA:   3'- uUUGGCUGGACGACGUac-CGcu-UCGc -5'
13948 5' -55.7 NC_003521.1 + 159822 0.71 0.741416
Target:  5'- cGGACCGGCCgugaggcGCUGCGcggaGGCGcGAGCGu -3'
miRNA:   3'- -UUUGGCUGGa------CGACGUa---CCGC-UUCGC- -5'
13948 5' -55.7 NC_003521.1 + 116368 0.7 0.78543
Target:  5'- gAGGCCGAgCUGCUGCugccgcgcgacGUGGUGGaacguugguuggguAGCGg -3'
miRNA:   3'- -UUUGGCUgGACGACG-----------UACCGCU--------------UCGC- -5'
13948 5' -55.7 NC_003521.1 + 30896 0.7 0.805942
Target:  5'- aGGGCCGAgCUGaaCUGCGgcaGGCGAgAGCGg -3'
miRNA:   3'- -UUUGGCUgGAC--GACGUa--CCGCU-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 144752 0.7 0.805942
Target:  5'- gGAGCUGACCcgGCUGC-UGGCGGucugGGaCGa -3'
miRNA:   3'- -UUUGGCUGGa-CGACGuACCGCU----UC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.