miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 93695 0.66 0.994541
Target:  5'- gGGUG-CGAgaugGCGgaUCGCGUGGC-GGUg -3'
miRNA:   3'- -CCACuGCUa---CGCa-AGCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 99309 0.66 0.995276
Target:  5'- uGUGGUGGUGCGacUUCGCGCccagggauGACgGGUg -3'
miRNA:   3'- cCACUGCUACGC--AAGCGCG--------UUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 100110 0.67 0.986465
Target:  5'- --cGACagcagGAUGCGacCcCGCGGCUGGCg -3'
miRNA:   3'- ccaCUG-----CUACGCaaGcGCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 102090 0.71 0.915335
Target:  5'- cGUGAUGAUGCGcaggcccagcuucucCGUGCAGC-GGCa -3'
miRNA:   3'- cCACUGCUACGCaa-------------GCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 102771 0.68 0.98298
Target:  5'- cGUGGcCGAcauggaccUGCGgcUGCGCGAC-GGCg -3'
miRNA:   3'- cCACU-GCU--------ACGCaaGCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 103477 0.68 0.978858
Target:  5'- aGGcGACGAacUGCGgcaCGCGCuGGCgaaagGGCg -3'
miRNA:   3'- -CCaCUGCU--ACGCaa-GCGCG-UUGa----CCG- -5'
13949 3' -52.7 NC_003521.1 + 110918 0.67 0.989374
Target:  5'- cGGUGcuguuccgcACGGUGcCGUUgGUGC-ACUGGg -3'
miRNA:   3'- -CCAC---------UGCUAC-GCAAgCGCGuUGACCg -5'
13949 3' -52.7 NC_003521.1 + 111950 0.68 0.977488
Target:  5'- -cUGGCGcgGCGgcaggaugagucugUUGCGCAcauuCUGGCa -3'
miRNA:   3'- ccACUGCuaCGCa-------------AGCGCGUu---GACCG- -5'
13949 3' -52.7 NC_003521.1 + 111988 0.66 0.995276
Target:  5'- aGGcUGugGGUgGCGUgccgGCGCAcggACUGGa -3'
miRNA:   3'- -CC-ACugCUA-CGCAag--CGCGU---UGACCg -5'
13949 3' -52.7 NC_003521.1 + 115444 0.66 0.992796
Target:  5'- gGGUGACGGUG-GUU-GUGCGGacggUGGUa -3'
miRNA:   3'- -CCACUGCUACgCAAgCGCGUUg---ACCG- -5'
13949 3' -52.7 NC_003521.1 + 115628 0.68 0.976539
Target:  5'- --aGAUGAUGCGgaucaggggcUCGUGCGugUcGGCg -3'
miRNA:   3'- ccaCUGCUACGCa---------AGCGCGUugA-CCG- -5'
13949 3' -52.7 NC_003521.1 + 116864 0.68 0.981003
Target:  5'- --cGACGAccUGCG--CGCGCAG-UGGCg -3'
miRNA:   3'- ccaCUGCU--ACGCaaGCGCGUUgACCG- -5'
13949 3' -52.7 NC_003521.1 + 118254 0.7 0.950946
Target:  5'- --cGugGAUgGCG-UCGCGCAgcucgucguagcGCUGGUg -3'
miRNA:   3'- ccaCugCUA-CGCaAGCGCGU------------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 118475 0.69 0.971351
Target:  5'- cGGcGACGGcgGCGgcCGCGC-GCUcGGCg -3'
miRNA:   3'- -CCaCUGCUa-CGCaaGCGCGuUGA-CCG- -5'
13949 3' -52.7 NC_003521.1 + 119986 0.69 0.962096
Target:  5'- --cGACGAgccggGCGacaUGCGCcGCUGGCu -3'
miRNA:   3'- ccaCUGCUa----CGCaa-GCGCGuUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 121109 0.66 0.994541
Target:  5'- cGGUGAaggUGggGUGUUCGCuGU-ACUGGg -3'
miRNA:   3'- -CCACU---GCuaCGCAAGCG-CGuUGACCg -5'
13949 3' -52.7 NC_003521.1 + 121770 0.68 0.98298
Target:  5'- uGGaUGAUGGUGuCGgccaCGgGCAGgUGGCg -3'
miRNA:   3'- -CC-ACUGCUAC-GCaa--GCgCGUUgACCG- -5'
13949 3' -52.7 NC_003521.1 + 123638 0.72 0.899062
Target:  5'- cGUGAUGAUGCGcagCGCaaacagguucaGCGACaGGCg -3'
miRNA:   3'- cCACUGCUACGCaa-GCG-----------CGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 123705 0.77 0.645583
Target:  5'- cGGUG-CaGGUGCGgcaCGCGCuguGCUGGCa -3'
miRNA:   3'- -CCACuG-CUACGCaa-GCGCGu--UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 123962 0.66 0.995276
Target:  5'- cGUGcgcuCGAUGa--UCGaccaGCAGCUGGCg -3'
miRNA:   3'- cCACu---GCUACgcaAGCg---CGUUGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.