Results 81 - 100 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13949 | 3' | -52.7 | NC_003521.1 | + | 124020 | 0.69 | 0.971351 |
Target: 5'- aGGUGccGCGGUGCGUcaGCGgCuGCUuGGCg -3' miRNA: 3'- -CCAC--UGCUACGCAagCGC-GuUGA-CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 124273 | 0.67 | 0.989374 |
Target: 5'- uGGUGuC--UGCGggCGCGagagGGCUGGCu -3' miRNA: 3'- -CCACuGcuACGCaaGCGCg---UUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 124811 | 0.68 | 0.98298 |
Target: 5'- cGUGACGua-CGU--GCGCAaGCUGGCg -3' miRNA: 3'- cCACUGCuacGCAagCGCGU-UGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 125255 | 0.67 | 0.990632 |
Target: 5'- cGGgGGCGAgaucaaCGUcCGCGCAGCacGGCg -3' miRNA: 3'- -CCaCUGCUac----GCAaGCGCGUUGa-CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 127070 | 0.66 | 0.995928 |
Target: 5'- aGGUGcuggaGGUGCG--CGCGgAGCUGGa -3' miRNA: 3'- -CCACug---CUACGCaaGCGCgUUGACCg -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 127310 | 0.67 | 0.986465 |
Target: 5'- --cGACGAcgGCGacggccaGCGCGACgGGCa -3' miRNA: 3'- ccaCUGCUa-CGCaag----CGCGUUGaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 127759 | 0.67 | 0.989241 |
Target: 5'- uGGUGGCcauccUGCGacuggugaCGCGCAucucggcGCUGGCg -3' miRNA: 3'- -CCACUGcu---ACGCaa------GCGCGU-------UGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 127831 | 0.66 | 0.996504 |
Target: 5'- uGGUGACGcUGa--UCGCcgaGCAcCUGGCc -3' miRNA: 3'- -CCACUGCuACgcaAGCG---CGUuGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 128149 | 0.66 | 0.995928 |
Target: 5'- --aGACGGUGCcgcuGUgcacgcCGCGCAucCUGGUg -3' miRNA: 3'- ccaCUGCUACG----CAa-----GCGCGUu-GACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 128592 | 0.66 | 0.995928 |
Target: 5'- uGGUaGGCGAUggccgucacgGCGUUCuCGgGGCUGaGCa -3' miRNA: 3'- -CCA-CUGCUA----------CGCAAGcGCgUUGAC-CG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 129905 | 0.71 | 0.922575 |
Target: 5'- --cGACGggGCGgcCGCGCGccuGCUGcGCg -3' miRNA: 3'- ccaCUGCuaCGCaaGCGCGU---UGAC-CG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 130186 | 0.74 | 0.808236 |
Target: 5'- --cGGCcagGUGUUCGCGCAGCaGGCg -3' miRNA: 3'- ccaCUGcuaCGCAAGCGCGUUGaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 131073 | 0.68 | 0.978858 |
Target: 5'- cGGUGGCGGcgaccGCGgcUCGCGCGggcuccggacgGCggGGCg -3' miRNA: 3'- -CCACUGCUa----CGCa-AGCGCGU-----------UGa-CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 132683 | 0.71 | 0.91704 |
Target: 5'- --aGACGAU-CGgcUCGCGCccGGCUGGCg -3' miRNA: 3'- ccaCUGCUAcGCa-AGCGCG--UUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 133367 | 0.66 | 0.994541 |
Target: 5'- uGUGGCGAggGCGgcugUUGCuGUAACcagugUGGCg -3' miRNA: 3'- cCACUGCUa-CGCa---AGCG-CGUUG-----ACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 138729 | 0.67 | 0.99177 |
Target: 5'- aGGUGGCaGAUGUG---GCGCcGCcGGCg -3' miRNA: 3'- -CCACUG-CUACGCaagCGCGuUGaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 141177 | 0.7 | 0.937792 |
Target: 5'- aGGUGACGcgaucgGCGUU-GCGCAg--GGCg -3' miRNA: 3'- -CCACUGCua----CGCAAgCGCGUugaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 141843 | 0.69 | 0.968468 |
Target: 5'- -cUGACGGUGCGcgcgucgUCGCGCGcgagguccagacAgaGGCg -3' miRNA: 3'- ccACUGCUACGCa------AGCGCGU------------UgaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 142595 | 0.68 | 0.983726 |
Target: 5'- uGGcGGCGGccucgcgcacccaguUGCGacgacgCGCGCGGCUGGg -3' miRNA: 3'- -CCaCUGCU---------------ACGCaa----GCGCGUUGACCg -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 143891 | 0.66 | 0.995276 |
Target: 5'- cGGUGcACcGUGaCGUU-GUGCAGCaGGCa -3' miRNA: 3'- -CCAC-UGcUAC-GCAAgCGCGUUGaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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