miRNA display CGI


Results 101 - 120 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 144919 0.68 0.98279
Target:  5'- cGGUGGcCGAggaGUucaugUCGCGCGucgccgcGCUGGCu -3'
miRNA:   3'- -CCACU-GCUacgCA-----AGCGCGU-------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 145162 0.66 0.992796
Target:  5'- aGUcGCGcgGCcagUCGCGCAACuccgucUGGCa -3'
miRNA:   3'- cCAcUGCuaCGca-AGCGCGUUG------ACCG- -5'
13949 3' -52.7 NC_003521.1 + 145438 0.69 0.971351
Target:  5'- aGGUGccaGA--CGgagUUGCGCGACUGGCc -3'
miRNA:   3'- -CCACug-CUacGCa--AGCGCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 145550 0.68 0.981003
Target:  5'- --cGGCGAgacGCcggCGCGCgAGCUGGCc -3'
miRNA:   3'- ccaCUGCUa--CGcaaGCGCG-UUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 150065 0.66 0.995276
Target:  5'- cGGUcACGGccgGcCGUUCGCGgAACgccgUGGCg -3'
miRNA:   3'- -CCAcUGCUa--C-GCAAGCGCgUUG----ACCG- -5'
13949 3' -52.7 NC_003521.1 + 150266 0.69 0.971351
Target:  5'- aGGUGGCGu--CG-UCGUGCGGCgGGUg -3'
miRNA:   3'- -CCACUGCuacGCaAGCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 150317 0.66 0.9926
Target:  5'- aGGUcGACGAUGaccacccgGUGCAGCgUGGCg -3'
miRNA:   3'- -CCA-CUGCUACgcaag---CGCGUUG-ACCG- -5'
13949 3' -52.7 NC_003521.1 + 150552 0.69 0.968468
Target:  5'- cGGUGGUGGUGCGgguggUgGCGgCGGCggcGGCg -3'
miRNA:   3'- -CCACUGCUACGCa----AgCGC-GUUGa--CCG- -5'
13949 3' -52.7 NC_003521.1 + 150642 0.66 0.994541
Target:  5'- --aGGCGGggGCGU--GCGCGACgaaGGCg -3'
miRNA:   3'- ccaCUGCUa-CGCAagCGCGUUGa--CCG- -5'
13949 3' -52.7 NC_003521.1 + 150696 0.67 0.990632
Target:  5'- gGGUGcUGcUGCGccggCG-GCGACUGGCu -3'
miRNA:   3'- -CCACuGCuACGCaa--GCgCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 153055 0.72 0.899062
Target:  5'- cGGUGaccgagGCGGUGCGcaagGCGCAGgaGGCg -3'
miRNA:   3'- -CCAC------UGCUACGCaag-CGCGUUgaCCG- -5'
13949 3' -52.7 NC_003521.1 + 153774 0.66 0.994541
Target:  5'- aGGUGcgcaGCGA-GCGccuggagGCGCAGCUGcGCg -3'
miRNA:   3'- -CCAC----UGCUaCGCaag----CGCGUUGAC-CG- -5'
13949 3' -52.7 NC_003521.1 + 153997 0.7 0.958596
Target:  5'- uGGUGggccACGGUGgGcaUCGUGCcGCUGGUg -3'
miRNA:   3'- -CCAC----UGCUACgCa-AGCGCGuUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 154490 0.72 0.892617
Target:  5'- cGGcGGCGAaGCGcUCGCGCGAgaGGg -3'
miRNA:   3'- -CCaCUGCUaCGCaAGCGCGUUgaCCg -5'
13949 3' -52.7 NC_003521.1 + 154683 0.67 0.987841
Target:  5'- cGGUcGACGcgGgGgaCGCGCGugcccgccuccugAUUGGCg -3'
miRNA:   3'- -CCA-CUGCuaCgCaaGCGCGU-------------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 156028 0.67 0.99177
Target:  5'- aGGUGAUGcgcaGCGUgagcagcgucUCGCGguAC-GGCg -3'
miRNA:   3'- -CCACUGCua--CGCA----------AGCGCguUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 162913 0.68 0.979736
Target:  5'- gGGUGACGggGaccucaaggagaaccUGUUCGUGC-GCgggGGCa -3'
miRNA:   3'- -CCACUGCuaC---------------GCAAGCGCGuUGa--CCG- -5'
13949 3' -52.7 NC_003521.1 + 163896 0.73 0.849467
Target:  5'- aGGUgccGACGGUGCGUUacucggGUGCGGC-GGCa -3'
miRNA:   3'- -CCA---CUGCUACGCAAg-----CGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 164692 0.69 0.973253
Target:  5'- cGGUGGCGcugcuagcaccagcgGCGgugUgGUGguGCUGGCg -3'
miRNA:   3'- -CCACUGCua-------------CGCa--AgCGCguUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 164740 0.74 0.833498
Target:  5'- cGGUGACGGcUGCGgcggCG-GCAGC-GGCg -3'
miRNA:   3'- -CCACUGCU-ACGCaa--GCgCGUUGaCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.