Results 121 - 140 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13949 | 3' | -52.7 | NC_003521.1 | + | 166842 | 0.72 | 0.892618 |
Target: 5'- cGGUGAgGAUacgcagGCGgUgGCGCGGCgGGCg -3' miRNA: 3'- -CCACUgCUA------CGCaAgCGCGUUGaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 167692 | 0.69 | 0.968468 |
Target: 5'- cGGUGACGAcGC--UCGUGgAGgaGGCg -3' miRNA: 3'- -CCACUGCUaCGcaAGCGCgUUgaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 171400 | 0.66 | 0.994541 |
Target: 5'- gGGUGACGGUG-GUccUgGUGUcGgUGGCg -3' miRNA: 3'- -CCACUGCUACgCA--AgCGCGuUgACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 172807 | 0.7 | 0.958596 |
Target: 5'- cGUGGCGGUGagGcUCaCGCAGCUGGg -3' miRNA: 3'- cCACUGCUACg-CaAGcGCGUUGACCg -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 180361 | 0.71 | 0.932454 |
Target: 5'- cGUGACGGUGCugcucguGUUgGUGguACUGGg -3' miRNA: 3'- cCACUGCUACG-------CAAgCGCguUGACCg -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 180966 | 0.69 | 0.962096 |
Target: 5'- cGGUGAUGGgcaucuugUGgGUUCGCGUu-UUGGUa -3' miRNA: 3'- -CCACUGCU--------ACgCAAGCGCGuuGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 186931 | 0.7 | 0.950946 |
Target: 5'- --gGACGAgcGCGUgacugucgUUGCGCAGCaGGCa -3' miRNA: 3'- ccaCUGCUa-CGCA--------AGCGCGUUGaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 187993 | 0.67 | 0.99177 |
Target: 5'- cGUGGCGAUGagacaagUCaCGUAccGCUGGCg -3' miRNA: 3'- cCACUGCUACgca----AGcGCGU--UGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 192548 | 0.66 | 0.995276 |
Target: 5'- cGGUgccGACGAacgGCGUggaGaCGCcGCUGGUg -3' miRNA: 3'- -CCA---CUGCUa--CGCAag-C-GCGuUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 193155 | 0.66 | 0.993717 |
Target: 5'- -aUGGCGGggGCGUcugcugcugcugUUGCGCAGCUGccGCc -3' miRNA: 3'- ccACUGCUa-CGCA------------AGCGCGUUGAC--CG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 195370 | 0.66 | 0.995928 |
Target: 5'- -uUGGCGggGCGUcUGCGgGACgcgGGUc -3' miRNA: 3'- ccACUGCuaCGCAaGCGCgUUGa--CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 196938 | 0.66 | 0.995276 |
Target: 5'- --cGACGccGUcgUCGagcaGCAGCUGGCg -3' miRNA: 3'- ccaCUGCuaCGcaAGCg---CGUUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 200380 | 0.69 | 0.968468 |
Target: 5'- aGGUGA--GUGUGUgcuggCGCGCGGCUGugacuGCa -3' miRNA: 3'- -CCACUgcUACGCAa----GCGCGUUGAC-----CG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 201049 | 0.66 | 0.992796 |
Target: 5'- cGGUGugGAUcGCGgaCG-GCGAUuaUGGUu -3' miRNA: 3'- -CCACugCUA-CGCaaGCgCGUUG--ACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 201586 | 0.66 | 0.996504 |
Target: 5'- uGGUGgccaccagcACGAUccaGgGgUCGCGCGgcgagaGCUGGCg -3' miRNA: 3'- -CCAC---------UGCUA---CgCaAGCGCGU------UGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 202085 | 0.68 | 0.981003 |
Target: 5'- cGG-GACGggGCccggCGCcucuaauaccGCAGCUGGCg -3' miRNA: 3'- -CCaCUGCuaCGcaa-GCG----------CGUUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 203717 | 0.7 | 0.958596 |
Target: 5'- uGGUcGGCGAcugcgGUGUUCGagGCGGCgggGGCg -3' miRNA: 3'- -CCA-CUGCUa----CGCAAGCg-CGUUGa--CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 204326 | 0.73 | 0.849467 |
Target: 5'- cGUGugG-UGCGacUGCgGCGACUGGCa -3' miRNA: 3'- cCACugCuACGCaaGCG-CGUUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 204720 | 0.73 | 0.839171 |
Target: 5'- cGUGGCGcgGC-UUCGCGUGcugcuuuccgugcuGCUGGCg -3' miRNA: 3'- cCACUGCuaCGcAAGCGCGU--------------UGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 212231 | 0.7 | 0.945496 |
Target: 5'- uGGUGGCGGUGCGcagcagcccgccgucCGCGUAgucGgUGGCc -3' miRNA: 3'- -CCACUGCUACGCaa-------------GCGCGU---UgACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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