Results 41 - 60 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13949 | 3' | -52.7 | NC_003521.1 | + | 164740 | 0.74 | 0.833498 |
Target: 5'- cGGUGACGGcUGCGgcggCG-GCAGC-GGCg -3' miRNA: 3'- -CCACUGCU-ACGCaa--GCgCGUUGaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 164692 | 0.69 | 0.973253 |
Target: 5'- cGGUGGCGcugcuagcaccagcgGCGgugUgGUGguGCUGGCg -3' miRNA: 3'- -CCACUGCua-------------CGCa--AgCGCguUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 163896 | 0.73 | 0.849467 |
Target: 5'- aGGUgccGACGGUGCGUUacucggGUGCGGC-GGCa -3' miRNA: 3'- -CCA---CUGCUACGCAAg-----CGCGUUGaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 162913 | 0.68 | 0.979736 |
Target: 5'- gGGUGACGggGaccucaaggagaaccUGUUCGUGC-GCgggGGCa -3' miRNA: 3'- -CCACUGCuaC---------------GCAAGCGCGuUGa--CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 156028 | 0.67 | 0.99177 |
Target: 5'- aGGUGAUGcgcaGCGUgagcagcgucUCGCGguAC-GGCg -3' miRNA: 3'- -CCACUGCua--CGCA----------AGCGCguUGaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 154683 | 0.67 | 0.987841 |
Target: 5'- cGGUcGACGcgGgGgaCGCGCGugcccgccuccugAUUGGCg -3' miRNA: 3'- -CCA-CUGCuaCgCaaGCGCGU-------------UGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 154490 | 0.72 | 0.892617 |
Target: 5'- cGGcGGCGAaGCGcUCGCGCGAgaGGg -3' miRNA: 3'- -CCaCUGCUaCGCaAGCGCGUUgaCCg -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 153997 | 0.7 | 0.958596 |
Target: 5'- uGGUGggccACGGUGgGcaUCGUGCcGCUGGUg -3' miRNA: 3'- -CCAC----UGCUACgCa-AGCGCGuUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 153774 | 0.66 | 0.994541 |
Target: 5'- aGGUGcgcaGCGA-GCGccuggagGCGCAGCUGcGCg -3' miRNA: 3'- -CCAC----UGCUaCGCaag----CGCGUUGAC-CG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 153055 | 0.72 | 0.899062 |
Target: 5'- cGGUGaccgagGCGGUGCGcaagGCGCAGgaGGCg -3' miRNA: 3'- -CCAC------UGCUACGCaag-CGCGUUgaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 150696 | 0.67 | 0.990632 |
Target: 5'- gGGUGcUGcUGCGccggCG-GCGACUGGCu -3' miRNA: 3'- -CCACuGCuACGCaa--GCgCGUUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 150642 | 0.66 | 0.994541 |
Target: 5'- --aGGCGGggGCGU--GCGCGACgaaGGCg -3' miRNA: 3'- ccaCUGCUa-CGCAagCGCGUUGa--CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 150552 | 0.69 | 0.968468 |
Target: 5'- cGGUGGUGGUGCGgguggUgGCGgCGGCggcGGCg -3' miRNA: 3'- -CCACUGCUACGCa----AgCGC-GUUGa--CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 150317 | 0.66 | 0.9926 |
Target: 5'- aGGUcGACGAUGaccacccgGUGCAGCgUGGCg -3' miRNA: 3'- -CCA-CUGCUACgcaag---CGCGUUG-ACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 150266 | 0.69 | 0.971351 |
Target: 5'- aGGUGGCGu--CG-UCGUGCGGCgGGUg -3' miRNA: 3'- -CCACUGCuacGCaAGCGCGUUGaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 150065 | 0.66 | 0.995276 |
Target: 5'- cGGUcACGGccgGcCGUUCGCGgAACgccgUGGCg -3' miRNA: 3'- -CCAcUGCUa--C-GCAAGCGCgUUG----ACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 145550 | 0.68 | 0.981003 |
Target: 5'- --cGGCGAgacGCcggCGCGCgAGCUGGCc -3' miRNA: 3'- ccaCUGCUa--CGcaaGCGCG-UUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 145438 | 0.69 | 0.971351 |
Target: 5'- aGGUGccaGA--CGgagUUGCGCGACUGGCc -3' miRNA: 3'- -CCACug-CUacGCa--AGCGCGUUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 145162 | 0.66 | 0.992796 |
Target: 5'- aGUcGCGcgGCcagUCGCGCAACuccgucUGGCa -3' miRNA: 3'- cCAcUGCuaCGca-AGCGCGUUG------ACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 144919 | 0.68 | 0.98279 |
Target: 5'- cGGUGGcCGAggaGUucaugUCGCGCGucgccgcGCUGGCu -3' miRNA: 3'- -CCACU-GCUacgCA-----AGCGCGU-------UGACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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