miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 143891 0.66 0.995276
Target:  5'- cGGUGcACcGUGaCGUU-GUGCAGCaGGCa -3'
miRNA:   3'- -CCAC-UGcUAC-GCAAgCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 142595 0.68 0.983726
Target:  5'- uGGcGGCGGccucgcgcacccaguUGCGacgacgCGCGCGGCUGGg -3'
miRNA:   3'- -CCaCUGCU---------------ACGCaa----GCGCGUUGACCg -5'
13949 3' -52.7 NC_003521.1 + 141843 0.69 0.968468
Target:  5'- -cUGACGGUGCGcgcgucgUCGCGCGcgagguccagacAgaGGCg -3'
miRNA:   3'- ccACUGCUACGCa------AGCGCGU------------UgaCCG- -5'
13949 3' -52.7 NC_003521.1 + 141177 0.7 0.937792
Target:  5'- aGGUGACGcgaucgGCGUU-GCGCAg--GGCg -3'
miRNA:   3'- -CCACUGCua----CGCAAgCGCGUugaCCG- -5'
13949 3' -52.7 NC_003521.1 + 138729 0.67 0.99177
Target:  5'- aGGUGGCaGAUGUG---GCGCcGCcGGCg -3'
miRNA:   3'- -CCACUG-CUACGCaagCGCGuUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 133367 0.66 0.994541
Target:  5'- uGUGGCGAggGCGgcugUUGCuGUAACcagugUGGCg -3'
miRNA:   3'- cCACUGCUa-CGCa---AGCG-CGUUG-----ACCG- -5'
13949 3' -52.7 NC_003521.1 + 132683 0.71 0.91704
Target:  5'- --aGACGAU-CGgcUCGCGCccGGCUGGCg -3'
miRNA:   3'- ccaCUGCUAcGCa-AGCGCG--UUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 131073 0.68 0.978858
Target:  5'- cGGUGGCGGcgaccGCGgcUCGCGCGggcuccggacgGCggGGCg -3'
miRNA:   3'- -CCACUGCUa----CGCa-AGCGCGU-----------UGa-CCG- -5'
13949 3' -52.7 NC_003521.1 + 130186 0.74 0.808236
Target:  5'- --cGGCcagGUGUUCGCGCAGCaGGCg -3'
miRNA:   3'- ccaCUGcuaCGCAAGCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 129905 0.71 0.922575
Target:  5'- --cGACGggGCGgcCGCGCGccuGCUGcGCg -3'
miRNA:   3'- ccaCUGCuaCGCaaGCGCGU---UGAC-CG- -5'
13949 3' -52.7 NC_003521.1 + 128592 0.66 0.995928
Target:  5'- uGGUaGGCGAUggccgucacgGCGUUCuCGgGGCUGaGCa -3'
miRNA:   3'- -CCA-CUGCUA----------CGCAAGcGCgUUGAC-CG- -5'
13949 3' -52.7 NC_003521.1 + 128149 0.66 0.995928
Target:  5'- --aGACGGUGCcgcuGUgcacgcCGCGCAucCUGGUg -3'
miRNA:   3'- ccaCUGCUACG----CAa-----GCGCGUu-GACCG- -5'
13949 3' -52.7 NC_003521.1 + 127831 0.66 0.996504
Target:  5'- uGGUGACGcUGa--UCGCcgaGCAcCUGGCc -3'
miRNA:   3'- -CCACUGCuACgcaAGCG---CGUuGACCG- -5'
13949 3' -52.7 NC_003521.1 + 127759 0.67 0.989241
Target:  5'- uGGUGGCcauccUGCGacuggugaCGCGCAucucggcGCUGGCg -3'
miRNA:   3'- -CCACUGcu---ACGCaa------GCGCGU-------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 127310 0.67 0.986465
Target:  5'- --cGACGAcgGCGacggccaGCGCGACgGGCa -3'
miRNA:   3'- ccaCUGCUa-CGCaag----CGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 127070 0.66 0.995928
Target:  5'- aGGUGcuggaGGUGCG--CGCGgAGCUGGa -3'
miRNA:   3'- -CCACug---CUACGCaaGCGCgUUGACCg -5'
13949 3' -52.7 NC_003521.1 + 125255 0.67 0.990632
Target:  5'- cGGgGGCGAgaucaaCGUcCGCGCAGCacGGCg -3'
miRNA:   3'- -CCaCUGCUac----GCAaGCGCGUUGa-CCG- -5'
13949 3' -52.7 NC_003521.1 + 124811 0.68 0.98298
Target:  5'- cGUGACGua-CGU--GCGCAaGCUGGCg -3'
miRNA:   3'- cCACUGCuacGCAagCGCGU-UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 124273 0.67 0.989374
Target:  5'- uGGUGuC--UGCGggCGCGagagGGCUGGCu -3'
miRNA:   3'- -CCACuGcuACGCaaGCGCg---UUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 124020 0.69 0.971351
Target:  5'- aGGUGccGCGGUGCGUcaGCGgCuGCUuGGCg -3'
miRNA:   3'- -CCAC--UGCUACGCAagCGC-GuUGA-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.