miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 46339 0.69 0.974039
Target:  5'- gGGUGGCGAUGUGcgagUCGCuGagGACcaucuUGGCg -3'
miRNA:   3'- -CCACUGCUACGCa---AGCG-Cg-UUG-----ACCG- -5'
13949 3' -52.7 NC_003521.1 + 71575 0.69 0.971351
Target:  5'- -uUGGCGuacaGUUCGCGCAGCaGGUu -3'
miRNA:   3'- ccACUGCuacgCAAGCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 124020 0.69 0.971351
Target:  5'- aGGUGccGCGGUGCGUcaGCGgCuGCUuGGCg -3'
miRNA:   3'- -CCAC--UGCUACGCAagCGC-GuUGA-CCG- -5'
13949 3' -52.7 NC_003521.1 + 213619 0.69 0.968468
Target:  5'- gGGUGGCGGU-CGc-CGCGCAGCaGGa -3'
miRNA:   3'- -CCACUGCUAcGCaaGCGCGUUGaCCg -5'
13949 3' -52.7 NC_003521.1 + 167692 0.69 0.968468
Target:  5'- cGGUGACGAcGC--UCGUGgAGgaGGCg -3'
miRNA:   3'- -CCACUGCUaCGcaAGCGCgUUgaCCG- -5'
13949 3' -52.7 NC_003521.1 + 150552 0.69 0.968468
Target:  5'- cGGUGGUGGUGCGgguggUgGCGgCGGCggcGGCg -3'
miRNA:   3'- -CCACUGCUACGCa----AgCGC-GUUGa--CCG- -5'
13949 3' -52.7 NC_003521.1 + 86665 0.69 0.968468
Target:  5'- -uUGACGAcGUGaUCGCGCcgaaagaagacGCUGGCg -3'
miRNA:   3'- ccACUGCUaCGCaAGCGCGu----------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 386 0.69 0.968468
Target:  5'- aGGUGA--GUGUGUgcuggCGCGCGGCUGugacuGCa -3'
miRNA:   3'- -CCACUgcUACGCAa----GCGCGUUGAC-----CG- -5'
13949 3' -52.7 NC_003521.1 + 186931 0.7 0.950946
Target:  5'- --gGACGAgcGCGUgacugucgUUGCGCAGCaGGCa -3'
miRNA:   3'- ccaCUGCUa-CGCA--------AGCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 31654 0.7 0.954881
Target:  5'- aGGUGuCGGU-UGUUCuccagGCGCAGCUcGGCg -3'
miRNA:   3'- -CCACuGCUAcGCAAG-----CGCGUUGA-CCG- -5'
13949 3' -52.7 NC_003521.1 + 57236 0.7 0.958596
Target:  5'- --aGGCGA-GCGgcucUCGCGCGGCcaguUGGCc -3'
miRNA:   3'- ccaCUGCUaCGCa---AGCGCGUUG----ACCG- -5'
13949 3' -52.7 NC_003521.1 + 172807 0.7 0.958596
Target:  5'- cGUGGCGGUGagGcUCaCGCAGCUGGg -3'
miRNA:   3'- cCACUGCUACg-CaAGcGCGUUGACCg -5'
13949 3' -52.7 NC_003521.1 + 66958 0.69 0.962096
Target:  5'- -cUGGCGcUGCGgcaggacgaGCGCAGcCUGGCa -3'
miRNA:   3'- ccACUGCuACGCaag------CGCGUU-GACCG- -5'
13949 3' -52.7 NC_003521.1 + 119986 0.69 0.962096
Target:  5'- --cGACGAgccggGCGacaUGCGCcGCUGGCu -3'
miRNA:   3'- ccaCUGCUa----CGCaa-GCGCGuUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 89284 0.69 0.965065
Target:  5'- cGUGAUGGUacaacccGCGUcCGCGCcgccuCUGGCc -3'
miRNA:   3'- cCACUGCUA-------CGCAaGCGCGuu---GACCG- -5'
13949 3' -52.7 NC_003521.1 + 5958 0.66 0.996504
Target:  5'- cGGUGACGgcGCccGUUCccCGCGGacgGGCg -3'
miRNA:   3'- -CCACUGCuaCG--CAAGc-GCGUUga-CCG- -5'
13949 3' -52.7 NC_003521.1 + 225798 0.83 0.374487
Target:  5'- uGGUGACGAcGCGUUcgucgaCGCGCGAC-GGCg -3'
miRNA:   3'- -CCACUGCUaCGCAA------GCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 123705 0.77 0.645583
Target:  5'- cGGUG-CaGGUGCGgcaCGCGCuguGCUGGCa -3'
miRNA:   3'- -CCACuG-CUACGCaa-GCGCGu--UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 215271 0.77 0.675673
Target:  5'- -cUGGCGGUGCGUUacgaGaCGCcGCUGGCu -3'
miRNA:   3'- ccACUGCUACGCAAg---C-GCGuUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 29013 0.77 0.675673
Target:  5'- cGGUGGCGcgGCccgCGCGCGuCUGGUu -3'
miRNA:   3'- -CCACUGCuaCGcaaGCGCGUuGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.