miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 63815 0.69 0.974039
Target:  5'- aGGUGACGAggGCGgcUC-CGUGACgcugGGCc -3'
miRNA:   3'- -CCACUGCUa-CGCa-AGcGCGUUGa---CCG- -5'
13949 3' -52.7 NC_003521.1 + 43233 0.71 0.932951
Target:  5'- cGGUGGgCGccgGCGggUCGCGCucGCUGGg -3'
miRNA:   3'- -CCACU-GCua-CGCa-AGCGCGu-UGACCg -5'
13949 3' -52.7 NC_003521.1 + 123705 0.77 0.645583
Target:  5'- cGGUG-CaGGUGCGgcaCGCGCuguGCUGGCa -3'
miRNA:   3'- -CCACuG-CUACGCaa-GCGCGu--UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 77857 0.69 0.974039
Target:  5'- cGGUGACG-UGgGUUCG-GCcAC-GGCg -3'
miRNA:   3'- -CCACUGCuACgCAAGCgCGuUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 225798 0.83 0.374487
Target:  5'- uGGUGACGAcGCGUUcgucgaCGCGCGAC-GGCg -3'
miRNA:   3'- -CCACUGCUaCGCAA------GCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 150317 0.66 0.9926
Target:  5'- aGGUcGACGAUGaccacccgGUGCAGCgUGGCg -3'
miRNA:   3'- -CCA-CUGCUACgcaag---CGCGUUG-ACCG- -5'
13949 3' -52.7 NC_003521.1 + 29013 0.77 0.675673
Target:  5'- cGGUGGCGcgGCccgCGCGCGuCUGGUu -3'
miRNA:   3'- -CCACUGCuaCGcaaGCGCGUuGACCG- -5'
13949 3' -52.7 NC_003521.1 + 187993 0.67 0.99177
Target:  5'- cGUGGCGAUGagacaagUCaCGUAccGCUGGCg -3'
miRNA:   3'- cCACUGCUACgca----AGcGCGU--UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 127759 0.67 0.989241
Target:  5'- uGGUGGCcauccUGCGacuggugaCGCGCAucucggcGCUGGCg -3'
miRNA:   3'- -CCACUGcu---ACGCaa------GCGCGU-------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 127310 0.67 0.986465
Target:  5'- --cGACGAcgGCGacggccaGCGCGACgGGCa -3'
miRNA:   3'- ccaCUGCUa-CGCaag----CGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 142595 0.68 0.983726
Target:  5'- uGGcGGCGGccucgcgcacccaguUGCGacgacgCGCGCGGCUGGg -3'
miRNA:   3'- -CCaCUGCU---------------ACGCaa----GCGCGUUGACCg -5'
13949 3' -52.7 NC_003521.1 + 42482 0.68 0.98298
Target:  5'- aGGUugUGGUGCGaUUGCGaCAgccGCUGGCc -3'
miRNA:   3'- -CCAcuGCUACGCaAGCGC-GU---UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 239230 0.68 0.981003
Target:  5'- cGG-GACGggGCccggCGCcucuaauaccGCAGCUGGCg -3'
miRNA:   3'- -CCaCUGCuaCGcaa-GCG----------CGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 145438 0.69 0.971351
Target:  5'- aGGUGccaGA--CGgagUUGCGCGACUGGCc -3'
miRNA:   3'- -CCACug-CUacGCa--AGCGCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 200380 0.69 0.968468
Target:  5'- aGGUGA--GUGUGUgcuggCGCGCGGCUGugacuGCa -3'
miRNA:   3'- -CCACUgcUACGCAa----GCGCGUUGAC-----CG- -5'
13949 3' -52.7 NC_003521.1 + 26518 0.7 0.950946
Target:  5'- gGGUGcagcaGCGcugGCGUUCcguGCGCGACgaggGGCu -3'
miRNA:   3'- -CCAC-----UGCua-CGCAAG---CGCGUUGa---CCG- -5'
13949 3' -52.7 NC_003521.1 + 141177 0.7 0.937792
Target:  5'- aGGUGACGcgaucgGCGUU-GCGCAg--GGCg -3'
miRNA:   3'- -CCACUGCua----CGCAAgCGCGUugaCCG- -5'
13949 3' -52.7 NC_003521.1 + 60283 0.72 0.905282
Target:  5'- aGGUGAggcCGGUGCugUCGCGCuGCUgcaGGCu -3'
miRNA:   3'- -CCACU---GCUACGcaAGCGCGuUGA---CCG- -5'
13949 3' -52.7 NC_003521.1 + 154490 0.72 0.892617
Target:  5'- cGGcGGCGAaGCGcUCGCGCGAgaGGg -3'
miRNA:   3'- -CCaCUGCUaCGCaAGCGCGUUgaCCg -5'
13949 3' -52.7 NC_003521.1 + 164740 0.74 0.833498
Target:  5'- cGGUGACGGcUGCGgcggCG-GCAGC-GGCg -3'
miRNA:   3'- -CCACUGCU-ACGCaa--GCgCGUUGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.