miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 2979 0.68 0.981003
Target:  5'- cGGUGACGgcGCuccCGCaCGAgUGGCg -3'
miRNA:   3'- -CCACUGCuaCGcaaGCGcGUUgACCG- -5'
13949 3' -52.7 NC_003521.1 + 124811 0.68 0.98298
Target:  5'- cGUGACGua-CGU--GCGCAaGCUGGCg -3'
miRNA:   3'- cCACUGCuacGCAagCGCGU-UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 154490 0.72 0.892617
Target:  5'- cGGcGGCGAaGCGcUCGCGCGAgaGGg -3'
miRNA:   3'- -CCaCUGCUaCGCaAGCGCGUUgaCCg -5'
13949 3' -52.7 NC_003521.1 + 60283 0.72 0.905282
Target:  5'- aGGUGAggcCGGUGCugUCGCGCuGCUgcaGGCu -3'
miRNA:   3'- -CCACU---GCUACGcaAGCGCGuUGA---CCG- -5'
13949 3' -52.7 NC_003521.1 + 71017 0.71 0.932951
Target:  5'- uGGUGAuCGGccGCGgcgCGCuGCAGCUGGa -3'
miRNA:   3'- -CCACU-GCUa-CGCaa-GCG-CGUUGACCg -5'
13949 3' -52.7 NC_003521.1 + 118254 0.7 0.950946
Target:  5'- --cGugGAUgGCG-UCGCGCAgcucgucguagcGCUGGUg -3'
miRNA:   3'- ccaCugCUA-CGCaAGCGCGU------------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 200380 0.69 0.968468
Target:  5'- aGGUGA--GUGUGUgcuggCGCGCGGCUGugacuGCa -3'
miRNA:   3'- -CCACUgcUACGCAa----GCGCGUUGAC-----CG- -5'
13949 3' -52.7 NC_003521.1 + 145438 0.69 0.971351
Target:  5'- aGGUGccaGA--CGgagUUGCGCGACUGGCc -3'
miRNA:   3'- -CCACug-CUacGCa--AGCGCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 63815 0.69 0.974039
Target:  5'- aGGUGACGAggGCGgcUC-CGUGACgcugGGCc -3'
miRNA:   3'- -CCACUGCUa-CGCa-AGcGCGUUGa---CCG- -5'
13949 3' -52.7 NC_003521.1 + 234564 0.68 0.978858
Target:  5'- cGGUGACGAgggcggucUGCGUccCGCcccagggcaggGCGACgaggUGGCg -3'
miRNA:   3'- -CCACUGCU--------ACGCAa-GCG-----------CGUUG----ACCG- -5'
13949 3' -52.7 NC_003521.1 + 37751 0.66 0.99645
Target:  5'- cGUGGCGAUGgGggUGCccuGCGGCaccacggUGGCc -3'
miRNA:   3'- cCACUGCUACgCaaGCG---CGUUG-------ACCG- -5'
13949 3' -52.7 NC_003521.1 + 128149 0.66 0.995928
Target:  5'- --aGACGGUGCcgcuGUgcacgcCGCGCAucCUGGUg -3'
miRNA:   3'- ccaCUGCUACG----CAa-----GCGCGUu-GACCG- -5'
13949 3' -52.7 NC_003521.1 + 53463 0.68 0.984798
Target:  5'- --gGGCGAgccggGCcg-CGCGCcGCUGGCc -3'
miRNA:   3'- ccaCUGCUa----CGcaaGCGCGuUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 154683 0.67 0.987841
Target:  5'- cGGUcGACGcgGgGgaCGCGCGugcccgccuccugAUUGGCg -3'
miRNA:   3'- -CCA-CUGCuaCgCaaGCGCGU-------------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 187993 0.67 0.99177
Target:  5'- cGUGGCGAUGagacaagUCaCGUAccGCUGGCg -3'
miRNA:   3'- cCACUGCUACgca----AGcGCGU--UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 150317 0.66 0.9926
Target:  5'- aGGUcGACGAUGaccacccgGUGCAGCgUGGCg -3'
miRNA:   3'- -CCA-CUGCUACgcaag---CGCGUUG-ACCG- -5'
13949 3' -52.7 NC_003521.1 + 224487 0.66 0.994541
Target:  5'- cGGUGugGAccGCGacuaCGgGCGucaguaccGCUGGCu -3'
miRNA:   3'- -CCACugCUa-CGCaa--GCgCGU--------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 133367 0.66 0.994541
Target:  5'- uGUGGCGAggGCGgcugUUGCuGUAACcagugUGGCg -3'
miRNA:   3'- cCACUGCUa-CGCa---AGCG-CGUUG-----ACCG- -5'
13949 3' -52.7 NC_003521.1 + 123962 0.66 0.995276
Target:  5'- cGUGcgcuCGAUGa--UCGaccaGCAGCUGGCg -3'
miRNA:   3'- cCACu---GCUACgcaAGCg---CGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 143891 0.66 0.995276
Target:  5'- cGGUGcACcGUGaCGUU-GUGCAGCaGGCa -3'
miRNA:   3'- -CCAC-UGcUAC-GCAAgCGCGUUGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.