miRNA display CGI


Results 101 - 120 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 110918 0.67 0.989374
Target:  5'- cGGUGcuguuccgcACGGUGcCGUUgGUGC-ACUGGg -3'
miRNA:   3'- -CCAC---------UGCUAC-GCAAgCGCGuUGACCg -5'
13949 3' -52.7 NC_003521.1 + 31020 0.67 0.990632
Target:  5'- --cGGCGAggacGCGUUCGUGguGgUGGg -3'
miRNA:   3'- ccaCUGCUa---CGCAAGCGCguUgACCg -5'
13949 3' -52.7 NC_003521.1 + 78652 0.67 0.990632
Target:  5'- -aUGACGAUGUcgUCGgGCuuCUcGGCg -3'
miRNA:   3'- ccACUGCUACGcaAGCgCGuuGA-CCG- -5'
13949 3' -52.7 NC_003521.1 + 145162 0.66 0.992796
Target:  5'- aGUcGCGcgGCcagUCGCGCAACuccgucUGGCa -3'
miRNA:   3'- cCAcUGCuaCGca-AGCGCGUUG------ACCG- -5'
13949 3' -52.7 NC_003521.1 + 240267 0.66 0.992796
Target:  5'- cGGUGugGAUcGCGgaCG-GCGAUuaUGGUu -3'
miRNA:   3'- -CCACugCUA-CGCaaGCgCGUUG--ACCG- -5'
13949 3' -52.7 NC_003521.1 + 150696 0.67 0.990632
Target:  5'- gGGUGcUGcUGCGccggCG-GCGACUGGCu -3'
miRNA:   3'- -CCACuGCuACGCaa--GCgCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 36704 0.67 0.99177
Target:  5'- uGGUGAUGGUGCccUUCGUGCcGCacGCc -3'
miRNA:   3'- -CCACUGCUACGc-AAGCGCGuUGacCG- -5'
13949 3' -52.7 NC_003521.1 + 100110 0.67 0.986465
Target:  5'- --cGACagcagGAUGCGacCcCGCGGCUGGCg -3'
miRNA:   3'- ccaCUG-----CUACGCaaGcGCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 89942 0.67 0.986465
Target:  5'- uGGUGGCgGAUGaaaaagcCGCGUcuCUGGCg -3'
miRNA:   3'- -CCACUG-CUACgcaa---GCGCGuuGACCG- -5'
13949 3' -52.7 NC_003521.1 + 59625 0.67 0.985816
Target:  5'- cGGcGGCGAccgcggcucgcagGCGUUgGUGCGgcagacGCUGGCg -3'
miRNA:   3'- -CCaCUGCUa------------CGCAAgCGCGU------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 119986 0.69 0.962096
Target:  5'- --cGACGAgccggGCGacaUGCGCcGCUGGCu -3'
miRNA:   3'- ccaCUGCUa----CGCaa-GCGCGuUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 89284 0.69 0.965065
Target:  5'- cGUGAUGGUacaacccGCGUcCGCGCcgccuCUGGCc -3'
miRNA:   3'- cCACUGCUA-------CGCAaGCGCGuu---GACCG- -5'
13949 3' -52.7 NC_003521.1 + 386 0.69 0.968468
Target:  5'- aGGUGA--GUGUGUgcuggCGCGCGGCUGugacuGCa -3'
miRNA:   3'- -CCACUgcUACGCAa----GCGCGUUGAC-----CG- -5'
13949 3' -52.7 NC_003521.1 + 86665 0.69 0.968468
Target:  5'- -uUGACGAcGUGaUCGCGCcgaaagaagacGCUGGCg -3'
miRNA:   3'- ccACUGCUaCGCaAGCGCGu----------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 150552 0.69 0.968468
Target:  5'- cGGUGGUGGUGCGgguggUgGCGgCGGCggcGGCg -3'
miRNA:   3'- -CCACUGCUACGCa----AgCGC-GUUGa--CCG- -5'
13949 3' -52.7 NC_003521.1 + 167692 0.69 0.968468
Target:  5'- cGGUGACGAcGC--UCGUGgAGgaGGCg -3'
miRNA:   3'- -CCACUGCUaCGcaAGCGCgUUgaCCG- -5'
13949 3' -52.7 NC_003521.1 + 202085 0.68 0.981003
Target:  5'- cGG-GACGggGCccggCGCcucuaauaccGCAGCUGGCg -3'
miRNA:   3'- -CCaCUGCuaCGcaa-GCG----------CGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 121770 0.68 0.98298
Target:  5'- uGGaUGAUGGUGuCGgccaCGgGCAGgUGGCg -3'
miRNA:   3'- -CC-ACUGCUAC-GCaa--GCgCGUUgACCG- -5'
13949 3' -52.7 NC_003521.1 + 144919 0.68 0.98279
Target:  5'- cGGUGGcCGAggaGUucaugUCGCGCGucgccgcGCUGGCu -3'
miRNA:   3'- -CCACU-GCUacgCA-----AGCGCGU-------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 232278 0.67 0.990632
Target:  5'- cGUGACGGUGgaUGUcgUCGCGCccACgguccgGGCa -3'
miRNA:   3'- cCACUGCUAC--GCA--AGCGCGu-UGa-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.