miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 386 0.69 0.968468
Target:  5'- aGGUGA--GUGUGUgcuggCGCGCGGCUGugacuGCa -3'
miRNA:   3'- -CCACUgcUACGCAa----GCGCGUUGAC-----CG- -5'
13949 3' -52.7 NC_003521.1 + 2979 0.68 0.981003
Target:  5'- cGGUGACGgcGCuccCGCaCGAgUGGCg -3'
miRNA:   3'- -CCACUGCuaCGcaaGCGcGUUgACCG- -5'
13949 3' -52.7 NC_003521.1 + 4950 0.67 0.99177
Target:  5'- cGG-GACGggGgGgacCGCGCGACgucgccGGCg -3'
miRNA:   3'- -CCaCUGCuaCgCaa-GCGCGUUGa-----CCG- -5'
13949 3' -52.7 NC_003521.1 + 5958 0.66 0.996504
Target:  5'- cGGUGACGgcGCccGUUCccCGCGGacgGGCg -3'
miRNA:   3'- -CCACUGCuaCG--CAAGc-GCGUUga-CCG- -5'
13949 3' -52.7 NC_003521.1 + 17207 0.67 0.990632
Target:  5'- -aUGGCGAgagaagaGCGUcgccgUCGCGCGguaUGGCa -3'
miRNA:   3'- ccACUGCUa------CGCA-----AGCGCGUug-ACCG- -5'
13949 3' -52.7 NC_003521.1 + 17809 1.15 0.004724
Target:  5'- cGGUGACGAUGCGUUCGCGCAACUGGCu -3'
miRNA:   3'- -CCACUGCUACGCAAGCGCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 19205 0.66 0.995276
Target:  5'- --aGACGGauCGcUCGUGCGAcCUGGCu -3'
miRNA:   3'- ccaCUGCUacGCaAGCGCGUU-GACCG- -5'
13949 3' -52.7 NC_003521.1 + 26518 0.7 0.950946
Target:  5'- gGGUGcagcaGCGcugGCGUUCcguGCGCGACgaggGGCu -3'
miRNA:   3'- -CCAC-----UGCua-CGCAAG---CGCGUUGa---CCG- -5'
13949 3' -52.7 NC_003521.1 + 26774 0.67 0.987987
Target:  5'- -aUGACGAUGgGgaCGCGCucggggGGCc -3'
miRNA:   3'- ccACUGCUACgCaaGCGCGuuga--CCG- -5'
13949 3' -52.7 NC_003521.1 + 29013 0.77 0.675673
Target:  5'- cGGUGGCGcgGCccgCGCGCGuCUGGUu -3'
miRNA:   3'- -CCACUGCuaCGcaaGCGCGUuGACCG- -5'
13949 3' -52.7 NC_003521.1 + 30543 0.67 0.987987
Target:  5'- --cGACGAcGUGgagCGCGCccgccagggucAGCUGGCc -3'
miRNA:   3'- ccaCUGCUaCGCaa-GCGCG-----------UUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 31020 0.67 0.990632
Target:  5'- --cGGCGAggacGCGUUCGUGguGgUGGg -3'
miRNA:   3'- ccaCUGCUa---CGCAAGCGCguUgACCg -5'
13949 3' -52.7 NC_003521.1 + 31412 0.75 0.781586
Target:  5'- cGUGACGuAUGCuggCGUGCAGCaGGCg -3'
miRNA:   3'- cCACUGC-UACGcaaGCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 31654 0.7 0.954881
Target:  5'- aGGUGuCGGU-UGUUCuccagGCGCAGCUcGGCg -3'
miRNA:   3'- -CCACuGCUAcGCAAG-----CGCGUUGA-CCG- -5'
13949 3' -52.7 NC_003521.1 + 36467 0.66 0.996504
Target:  5'- uGUGGCGAcaGCGUUUGaGCcGCUcGGCc -3'
miRNA:   3'- cCACUGCUa-CGCAAGCgCGuUGA-CCG- -5'
13949 3' -52.7 NC_003521.1 + 36704 0.67 0.99177
Target:  5'- uGGUGAUGGUGCccUUCGUGCcGCacGCc -3'
miRNA:   3'- -CCACUGCUACGc-AAGCGCGuUGacCG- -5'
13949 3' -52.7 NC_003521.1 + 37450 0.74 0.79061
Target:  5'- aGGUGACGcUGUGggcUCGCGC-GCgGGCc -3'
miRNA:   3'- -CCACUGCuACGCa--AGCGCGuUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 37751 0.66 0.99645
Target:  5'- cGUGGCGAUGgGggUGCccuGCGGCaccacggUGGCc -3'
miRNA:   3'- cCACUGCUACgCaaGCG---CGUUG-------ACCG- -5'
13949 3' -52.7 NC_003521.1 + 38451 0.71 0.91704
Target:  5'- gGGUGACGAUGaaacCGUcUGgGCu-CUGGCg -3'
miRNA:   3'- -CCACUGCUAC----GCAaGCgCGuuGACCG- -5'
13949 3' -52.7 NC_003521.1 + 40884 0.66 0.995928
Target:  5'- --cGACGAUGCGg-CGagaaGCGGCUgcaccGGCg -3'
miRNA:   3'- ccaCUGCUACGCaaGCg---CGUUGA-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.