miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 186931 0.7 0.950946
Target:  5'- --gGACGAgcGCGUgacugucgUUGCGCAGCaGGCa -3'
miRNA:   3'- ccaCUGCUa-CGCA--------AGCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 123638 0.72 0.899062
Target:  5'- cGUGAUGAUGCGcagCGCaaacagguucaGCGACaGGCg -3'
miRNA:   3'- cCACUGCUACGCaa-GCG-----------CGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 102090 0.71 0.915335
Target:  5'- cGUGAUGAUGCGcaggcccagcuucucCGUGCAGC-GGCa -3'
miRNA:   3'- cCACUGCUACGCaa-------------GCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 38451 0.71 0.91704
Target:  5'- gGGUGACGAUGaaacCGUcUGgGCu-CUGGCg -3'
miRNA:   3'- -CCACUGCUAC----GCAaGCgCGuuGACCG- -5'
13949 3' -52.7 NC_003521.1 + 132683 0.71 0.91704
Target:  5'- --aGACGAU-CGgcUCGCGCccGGCUGGCg -3'
miRNA:   3'- ccaCUGCUAcGCa-AGCGCG--UUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 129905 0.71 0.922575
Target:  5'- --cGACGggGCGgcCGCGCGccuGCUGcGCg -3'
miRNA:   3'- ccaCUGCuaCGCaaGCGCGU---UGAC-CG- -5'
13949 3' -52.7 NC_003521.1 + 224813 0.71 0.922575
Target:  5'- cGUGGCGuaggGCG-UC-UGCGGCUGGCg -3'
miRNA:   3'- cCACUGCua--CGCaAGcGCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 180361 0.71 0.932454
Target:  5'- cGUGACGGUGCugcucguGUUgGUGguACUGGg -3'
miRNA:   3'- cCACUGCUACG-------CAAgCGCguUGACCg -5'
13949 3' -52.7 NC_003521.1 + 212231 0.7 0.945496
Target:  5'- uGGUGGCGGUGCGcagcagcccgccgucCGCGUAgucGgUGGCc -3'
miRNA:   3'- -CCACUGCUACGCaa-------------GCGCGU---UgACCG- -5'
13949 3' -52.7 NC_003521.1 + 166842 0.72 0.892618
Target:  5'- cGGUGAgGAUacgcagGCGgUgGCGCGGCgGGCg -3'
miRNA:   3'- -CCACUgCUA------CGCaAgCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 58030 0.72 0.892618
Target:  5'- --cGACGAggGCGcgCGCGUGuugcuGCUGGCg -3'
miRNA:   3'- ccaCUGCUa-CGCaaGCGCGU-----UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 49881 0.72 0.885953
Target:  5'- -aUGGCGGU-CGUggCGUGCGugUGGCg -3'
miRNA:   3'- ccACUGCUAcGCAa-GCGCGUugACCG- -5'
13949 3' -52.7 NC_003521.1 + 60848 0.75 0.763157
Target:  5'- --gGACuucccgcagGUGUUCGCGCAGCUGGUg -3'
miRNA:   3'- ccaCUGcua------CGCAAGCGCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 31412 0.75 0.781586
Target:  5'- cGUGACGuAUGCuggCGUGCAGCaGGCg -3'
miRNA:   3'- cCACUGC-UACGcaaGCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 37450 0.74 0.79061
Target:  5'- aGGUGACGcUGUGggcUCGCGC-GCgGGCc -3'
miRNA:   3'- -CCACUGCuACGCa--AGCGCGuUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 83689 0.74 0.825245
Target:  5'- cGUGACGuUGUGgaCGCGCgAGCgGGCg -3'
miRNA:   3'- cCACUGCuACGCaaGCGCG-UUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 225872 0.73 0.841575
Target:  5'- aGGUGcCGGUGCuccaUGCGCGuCUGGCg -3'
miRNA:   3'- -CCACuGCUACGcaa-GCGCGUuGACCG- -5'
13949 3' -52.7 NC_003521.1 + 163896 0.73 0.849467
Target:  5'- aGGUgccGACGGUGCGUUacucggGUGCGGC-GGCa -3'
miRNA:   3'- -CCA---CUGCUACGCAAg-----CGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 212773 0.73 0.867619
Target:  5'- aGGUGACGAUGcCGUagagGCGCAcgauccagagaaaauGCUGGa -3'
miRNA:   3'- -CCACUGCUAC-GCAag--CGCGU---------------UGACCg -5'
13949 3' -52.7 NC_003521.1 + 67038 0.72 0.883911
Target:  5'- aGUGACGGUGUccGUggccaUCGCGCAGacccucaaggcuuuCUGGCc -3'
miRNA:   3'- cCACUGCUACG--CA-----AGCGCGUU--------------GACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.