miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 87570 0.66 0.995276
Target:  5'- uGGaUGACGGgcagGCGggUGCGCAcgcggACgaaGGCc -3'
miRNA:   3'- -CC-ACUGCUa---CGCaaGCGCGU-----UGa--CCG- -5'
13949 3' -52.7 NC_003521.1 + 111988 0.66 0.995276
Target:  5'- aGGcUGugGGUgGCGUgccgGCGCAcggACUGGa -3'
miRNA:   3'- -CC-ACugCUA-CGCAag--CGCGU---UGACCg -5'
13949 3' -52.7 NC_003521.1 + 143891 0.66 0.995276
Target:  5'- cGGUGcACcGUGaCGUU-GUGCAGCaGGCa -3'
miRNA:   3'- -CCAC-UGcUAC-GCAAgCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 150065 0.66 0.995276
Target:  5'- cGGUcACGGccgGcCGUUCGCGgAACgccgUGGCg -3'
miRNA:   3'- -CCAcUGCUa--C-GCAAGCGCgUUG----ACCG- -5'
13949 3' -52.7 NC_003521.1 + 192548 0.66 0.995276
Target:  5'- cGGUgccGACGAacgGCGUggaGaCGCcGCUGGUg -3'
miRNA:   3'- -CCA---CUGCUa--CGCAag-C-GCGuUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 196938 0.66 0.995276
Target:  5'- --cGACGccGUcgUCGagcaGCAGCUGGCg -3'
miRNA:   3'- ccaCUGCuaCGcaAGCg---CGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 121109 0.66 0.994541
Target:  5'- cGGUGAaggUGggGUGUUCGCuGU-ACUGGg -3'
miRNA:   3'- -CCACU---GCuaCGCAAGCG-CGuUGACCg -5'
13949 3' -52.7 NC_003521.1 + 86269 0.66 0.994541
Target:  5'- cGGUcACGAcuaccgcuucaUGCGUcaGCGCugucuGCUGGCc -3'
miRNA:   3'- -CCAcUGCU-----------ACGCAagCGCGu----UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 153774 0.66 0.994541
Target:  5'- aGGUGcgcaGCGA-GCGccuggagGCGCAGCUGcGCg -3'
miRNA:   3'- -CCAC----UGCUaCGCaag----CGCGUUGAC-CG- -5'
13949 3' -52.7 NC_003521.1 + 150642 0.66 0.994541
Target:  5'- --aGGCGGggGCGU--GCGCGACgaaGGCg -3'
miRNA:   3'- ccaCUGCUa-CGCAagCGCGUUGa--CCG- -5'
13949 3' -52.7 NC_003521.1 + 171400 0.66 0.994541
Target:  5'- gGGUGACGGUG-GUccUgGUGUcGgUGGCg -3'
miRNA:   3'- -CCACUGCUACgCA--AgCGCGuUgACCG- -5'
13949 3' -52.7 NC_003521.1 + 133367 0.66 0.994541
Target:  5'- uGUGGCGAggGCGgcugUUGCuGUAACcagugUGGCg -3'
miRNA:   3'- cCACUGCUa-CGCa---AGCG-CGUUG-----ACCG- -5'
13949 3' -52.7 NC_003521.1 + 224487 0.66 0.994541
Target:  5'- cGGUGugGAccGCGacuaCGgGCGucaguaccGCUGGCu -3'
miRNA:   3'- -CCACugCUa-CGCaa--GCgCGU--------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 69251 0.66 0.994541
Target:  5'- uGGUGAUGAUG-GUg-GC-CGACgUGGCa -3'
miRNA:   3'- -CCACUGCUACgCAagCGcGUUG-ACCG- -5'
13949 3' -52.7 NC_003521.1 + 93695 0.66 0.994541
Target:  5'- gGGUG-CGAgaugGCGgaUCGCGUGGC-GGUg -3'
miRNA:   3'- -CCACuGCUa---CGCa-AGCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 193155 0.66 0.993717
Target:  5'- -aUGGCGGggGCGUcugcugcugcugUUGCGCAGCUGccGCc -3'
miRNA:   3'- ccACUGCUa-CGCA------------AGCGCGUUGAC--CG- -5'
13949 3' -52.7 NC_003521.1 + 72478 0.66 0.993717
Target:  5'- --cGGCGAgUGCGccUCGUGCAgucACgGGCa -3'
miRNA:   3'- ccaCUGCU-ACGCa-AGCGCGU---UGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 219355 0.66 0.99363
Target:  5'- uGGUGACGAUGCccgaacagGUcUCGCugcucauGCAcCUGGg -3'
miRNA:   3'- -CCACUGCUACG--------CA-AGCG-------CGUuGACCg -5'
13949 3' -52.7 NC_003521.1 + 115444 0.66 0.992796
Target:  5'- gGGUGACGGUG-GUU-GUGCGGacggUGGUa -3'
miRNA:   3'- -CCACUGCUACgCAAgCGCGUUg---ACCG- -5'
13949 3' -52.7 NC_003521.1 + 218745 0.66 0.992796
Target:  5'- cGG-GACGGucccccaugcUGCGUUCGCG-GGCUcGGUc -3'
miRNA:   3'- -CCaCUGCU----------ACGCAAGCGCgUUGA-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.