miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1395 5' -56.1 NC_001335.1 + 30955 0.66 0.672334
Target:  5'- cGCGAGauCGUGGCa--GGGUUCACgCCg -3'
miRNA:   3'- aUGUUC--GCGCCGcagCUCAAGUGgGG- -5'
1395 5' -56.1 NC_001335.1 + 4688 0.66 0.650418
Target:  5'- cGCGAGCGCGGgccaUGUCGuGg--ACCCa -3'
miRNA:   3'- aUGUUCGCGCC----GCAGCuCaagUGGGg -5'
1395 5' -56.1 NC_001335.1 + 38008 0.66 0.63943
Target:  5'- cACAcAGCuCGGCGgugaucgugUCGAGUUCuCCCUc -3'
miRNA:   3'- aUGU-UCGcGCCGC---------AGCUCAAGuGGGG- -5'
1395 5' -56.1 NC_001335.1 + 15627 0.66 0.628435
Target:  5'- cGCGAGCGCGuaGCGguccUCG-GUccaGCCCCg -3'
miRNA:   3'- aUGUUCGCGC--CGC----AGCuCAag-UGGGG- -5'
1395 5' -56.1 NC_001335.1 + 18613 0.67 0.603175
Target:  5'- cAgGAGCGCGGCcccugcuucgcgucGUUGAGgaugacgACCCCa -3'
miRNA:   3'- aUgUUCGCGCCG--------------CAGCUCaag----UGGGG- -5'
1395 5' -56.1 NC_001335.1 + 3078 0.67 0.595508
Target:  5'- ---cGGaCGCGGCGUCGG--UCACCUUc -3'
miRNA:   3'- auguUC-GCGCCGCAGCUcaAGUGGGG- -5'
1395 5' -56.1 NC_001335.1 + 7810 0.67 0.595508
Target:  5'- cUGC-AGCGCGGUGaCcGGaUCACCCUc -3'
miRNA:   3'- -AUGuUCGCGCCGCaGcUCaAGUGGGG- -5'
1395 5' -56.1 NC_001335.1 + 7929 0.67 0.584583
Target:  5'- gACGAGCGCGGUccaGUCGuuggacUUCgACCCg -3'
miRNA:   3'- aUGUUCGCGCCG---CAGCuc----AAG-UGGGg -5'
1395 5' -56.1 NC_001335.1 + 36774 0.68 0.530708
Target:  5'- cACGAcCGcCGGCcaGUCGAcuaccugcaccaGUUCGCCCCg -3'
miRNA:   3'- aUGUUcGC-GCCG--CAGCU------------CAAGUGGGG- -5'
1395 5' -56.1 NC_001335.1 + 7043 0.68 0.530708
Target:  5'- aGCAgAGCGCGGCGgugaaCGGauccUUGCCCCa -3'
miRNA:   3'- aUGU-UCGCGCCGCa----GCUca--AGUGGGG- -5'
1395 5' -56.1 NC_001335.1 + 8616 0.69 0.468647
Target:  5'- -cCGAGCGCcaGGcCGUCGAGgguuucCGCCUCg -3'
miRNA:   3'- auGUUCGCG--CC-GCAGCUCaa----GUGGGG- -5'
1395 5' -56.1 NC_001335.1 + 7783 0.69 0.458661
Target:  5'- gAUAAGCaCGGCaggGAGUUCGCUCCg -3'
miRNA:   3'- aUGUUCGcGCCGcagCUCAAGUGGGG- -5'
1395 5' -56.1 NC_001335.1 + 477 0.69 0.458661
Target:  5'- aGCGAGUGCcauGCacaGUUGAG-UCACCCCu -3'
miRNA:   3'- aUGUUCGCGc--CG---CAGCUCaAGUGGGG- -5'
1395 5' -56.1 NC_001335.1 + 29448 0.69 0.448789
Target:  5'- cUGCAGGCGCGGaccucgcgcaUGUCGAucaccggCAUCCCg -3'
miRNA:   3'- -AUGUUCGCGCC----------GCAGCUcaa----GUGGGG- -5'
1395 5' -56.1 NC_001335.1 + 33251 0.7 0.401277
Target:  5'- gACAA-CGCGGUGUCG--UUCACCgCCa -3'
miRNA:   3'- aUGUUcGCGCCGCAGCucAAGUGG-GG- -5'
1395 5' -56.1 NC_001335.1 + 13000 0.7 0.392165
Target:  5'- --gGGGCGCGGUGUCGG--UCGCUCg -3'
miRNA:   3'- augUUCGCGCCGCAGCUcaAGUGGGg -5'
1395 5' -56.1 NC_001335.1 + 6703 0.71 0.37435
Target:  5'- gGCAAGCuccgggugGUGGuUGUUGAGgcUCACCCCg -3'
miRNA:   3'- aUGUUCG--------CGCC-GCAGCUCa-AGUGGGG- -5'
1395 5' -56.1 NC_001335.1 + 4977 0.71 0.348673
Target:  5'- aACGuGCaaGCGGUGUgCGAGUagACCCCg -3'
miRNA:   3'- aUGUuCG--CGCCGCA-GCUCAagUGGGG- -5'
1395 5' -56.1 NC_001335.1 + 17174 0.74 0.233387
Target:  5'- cGCAGGCGCGGUGcUGcAGcUCGCUCCg -3'
miRNA:   3'- aUGUUCGCGCCGCaGC-UCaAGUGGGG- -5'
1395 5' -56.1 NC_001335.1 + 37412 1.11 0.00058
Target:  5'- gUACAAGCGCGGCGUCGAGUUCACCCCg -3'
miRNA:   3'- -AUGUUCGCGCCGCAGCUCAAGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.