miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 3' -55.4 NC_003521.1 + 19475 1.09 0.005761
Target:  5'- cGAAAGCCAGGUCGCACGAGCGAUCCGu -3'
miRNA:   3'- -CUUUCGGUCCAGCGUGCUCGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 29319 0.85 0.169357
Target:  5'- gGAAGGCCAGGUCGUugaGCGuGUGGUCCGu -3'
miRNA:   3'- -CUUUCGGUCCAGCG---UGCuCGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 224423 0.77 0.475641
Target:  5'- --cGGCCAGG-CGCugcgugguggGCGAGCGGUCCa -3'
miRNA:   3'- cuuUCGGUCCaGCG----------UGCUCGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 140056 0.77 0.494163
Target:  5'- gGAAGGCCucGUUGCACGAGUGcgCCa -3'
miRNA:   3'- -CUUUCGGucCAGCGUGCUCGCuaGGc -5'
13950 3' -55.4 NC_003521.1 + 20962 0.74 0.660556
Target:  5'- ---cGCCAGGUUG-GCGGGCGGUUCGc -3'
miRNA:   3'- cuuuCGGUCCAGCgUGCUCGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 106560 0.74 0.669492
Target:  5'- -uGGGCC-GGUCGCgagagcacgaucuGCGAGuCGAUCCGg -3'
miRNA:   3'- cuUUCGGuCCAGCG-------------UGCUC-GCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 6174 0.73 0.690244
Target:  5'- cGGGGCCAGG-CGCagaACGAGaCGAUCUGc -3'
miRNA:   3'- cUUUCGGUCCaGCG---UGCUC-GCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 73425 0.72 0.757516
Target:  5'- ---cGCCAGGUCGCAggcCGAgGCGGcgCCGc -3'
miRNA:   3'- cuuuCGGUCCAGCGU---GCU-CGCUa-GGC- -5'
13950 3' -55.4 NC_003521.1 + 142132 0.72 0.757516
Target:  5'- uGAGGGCCuGGUgGCugGugaGGCGGUgCCGg -3'
miRNA:   3'- -CUUUCGGuCCAgCGugC---UCGCUA-GGC- -5'
13950 3' -55.4 NC_003521.1 + 103445 0.72 0.766774
Target:  5'- ---cGCCAGGUCGCGgCGGuuGCGcgCCa -3'
miRNA:   3'- cuuuCGGUCCAGCGU-GCU--CGCuaGGc -5'
13950 3' -55.4 NC_003521.1 + 92445 0.72 0.775918
Target:  5'- gGGAGGCCAGGgcaUCGCcccgaccccCGGGCGAgCCGg -3'
miRNA:   3'- -CUUUCGGUCC---AGCGu--------GCUCGCUaGGC- -5'
13950 3' -55.4 NC_003521.1 + 128368 0.71 0.793832
Target:  5'- aGAAGGUCAGGUC-CACGuuGCGcUCCa -3'
miRNA:   3'- -CUUUCGGUCCAGcGUGCu-CGCuAGGc -5'
13950 3' -55.4 NC_003521.1 + 195648 0.71 0.802585
Target:  5'- cGAGGCCAGGgagUCGCaccaccacuuacGCGuGCGGUCCc -3'
miRNA:   3'- cUUUCGGUCC---AGCG------------UGCuCGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 50225 0.7 0.827936
Target:  5'- cGAAGGUCAGGUCGCG-GGGCcacUCCu -3'
miRNA:   3'- -CUUUCGGUCCAGCGUgCUCGcu-AGGc -5'
13950 3' -55.4 NC_003521.1 + 240033 0.7 0.844004
Target:  5'- --cGGCgGGG-CGC-CGGGCGGUCCu -3'
miRNA:   3'- cuuUCGgUCCaGCGuGCUCGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 41046 0.7 0.844004
Target:  5'- cGGGAGuCCGGaGUCGC-CGAGCu-UCCGg -3'
miRNA:   3'- -CUUUC-GGUC-CAGCGuGCUCGcuAGGC- -5'
13950 3' -55.4 NC_003521.1 + 201282 0.7 0.844004
Target:  5'- --cGGCgGGG-CGC-CGGGCGGUCCu -3'
miRNA:   3'- cuuUCGgUCCaGCGuGCUCGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 105321 0.7 0.851767
Target:  5'- gGAucGCCccuGGGgcugcucgCGCACGGGCGggCCGu -3'
miRNA:   3'- -CUuuCGG---UCCa-------GCGUGCUCGCuaGGC- -5'
13950 3' -55.4 NC_003521.1 + 65282 0.7 0.851767
Target:  5'- -cGGGCCAGGaUGCGCGugcuaggggcGCGGUCCa -3'
miRNA:   3'- cuUUCGGUCCaGCGUGCu---------CGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 92082 0.7 0.859341
Target:  5'- cGggGGUCGGGgggUGCGCaGGGCGGUgccCCGg -3'
miRNA:   3'- -CuuUCGGUCCa--GCGUG-CUCGCUA---GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.