Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13950 | 3' | -55.4 | NC_003521.1 | + | 34142 | 0.67 | 0.93811 |
Target: 5'- cAGGGCCAGGcccacgCGCACGAaggccuugaggucGCGggCCa -3' miRNA: 3'- cUUUCGGUCCa-----GCGUGCU-------------CGCuaGGc -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 84874 | 0.69 | 0.876714 |
Target: 5'- aGAAGGCCgcccgguccGGGUgGCGCGAGUaggccgucagcgcccGGUCCa -3' miRNA: 3'- -CUUUCGG---------UCCAgCGUGCUCG---------------CUAGGc -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 109490 | 0.69 | 0.894187 |
Target: 5'- ---cGCCAGG-CGCuccaGCGAGUGGUCgCGc -3' miRNA: 3'- cuuuCGGUCCaGCG----UGCUCGCUAG-GC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 115773 | 0.69 | 0.90052 |
Target: 5'- aGAAGGCCGGuGUgacggCGCACGAaGCGcgucagcaGUCCGc -3' miRNA: 3'- -CUUUCGGUC-CA-----GCGUGCU-CGC--------UAGGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 164751 | 0.68 | 0.906632 |
Target: 5'- gGggGGCaucgcGGUCGC-CGGGCGAaCCa -3' miRNA: 3'- -CuuUCGgu---CCAGCGuGCUCGCUaGGc -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 53461 | 0.68 | 0.912521 |
Target: 5'- --cGGCCAGGgCGUccuccaGCGAGCGcUCCu -3' miRNA: 3'- cuuUCGGUCCaGCG------UGCUCGCuAGGc -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 129727 | 0.68 | 0.912521 |
Target: 5'- --cGGCCc-GUCGaCGCGAGCGcGUCCGc -3' miRNA: 3'- cuuUCGGucCAGC-GUGCUCGC-UAGGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 138702 | 0.68 | 0.916509 |
Target: 5'- -uGAGCCuGGgcgGCACGGGCGcuggcugguggugcGUCCGg -3' miRNA: 3'- cuUUCGGuCCag-CGUGCUCGC--------------UAGGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 27476 | 0.68 | 0.918185 |
Target: 5'- --uGGCCAGGUcCGuCAUGuGGCGGUCgGa -3' miRNA: 3'- cuuUCGGUCCA-GC-GUGC-UCGCUAGgC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 123293 | 0.69 | 0.8739 |
Target: 5'- ---cGUCAGGUC-CGCGGGCGAcUCGg -3' miRNA: 3'- cuuuCGGUCCAGcGUGCUCGCUaGGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 24187 | 0.69 | 0.873191 |
Target: 5'- cGAAGCCGGG-CgGCAUGGGCGGaacgucgUCCa -3' miRNA: 3'- cUUUCGGUCCaG-CGUGCUCGCU-------AGGc -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 92082 | 0.7 | 0.859341 |
Target: 5'- cGggGGUCGGGgggUGCGCaGGGCGGUgccCCGg -3' miRNA: 3'- -CuuUCGGUCCa--GCGUG-CUCGCUA---GGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 140056 | 0.77 | 0.494163 |
Target: 5'- gGAAGGCCucGUUGCACGAGUGcgCCa -3' miRNA: 3'- -CUUUCGGucCAGCGUGCUCGCuaGGc -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 106560 | 0.74 | 0.669492 |
Target: 5'- -uGGGCC-GGUCGCgagagcacgaucuGCGAGuCGAUCCGg -3' miRNA: 3'- cuUUCGGuCCAGCG-------------UGCUC-GCUAGGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 6174 | 0.73 | 0.690244 |
Target: 5'- cGGGGCCAGG-CGCagaACGAGaCGAUCUGc -3' miRNA: 3'- cUUUCGGUCCaGCG---UGCUC-GCUAGGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 103445 | 0.72 | 0.766774 |
Target: 5'- ---cGCCAGGUCGCGgCGGuuGCGcgCCa -3' miRNA: 3'- cuuuCGGUCCAGCGU-GCU--CGCuaGGc -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 128368 | 0.71 | 0.793832 |
Target: 5'- aGAAGGUCAGGUC-CACGuuGCGcUCCa -3' miRNA: 3'- -CUUUCGGUCCAGcGUGCu-CGCuAGGc -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 195648 | 0.71 | 0.802585 |
Target: 5'- cGAGGCCAGGgagUCGCaccaccacuuacGCGuGCGGUCCc -3' miRNA: 3'- cUUUCGGUCC---AGCG------------UGCuCGCUAGGc -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 50225 | 0.7 | 0.827936 |
Target: 5'- cGAAGGUCAGGUCGCG-GGGCcacUCCu -3' miRNA: 3'- -CUUUCGGUCCAGCGUgCUCGcu-AGGc -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 240033 | 0.7 | 0.844004 |
Target: 5'- --cGGCgGGG-CGC-CGGGCGGUCCu -3' miRNA: 3'- cuuUCGgUCCaGCGuGCUCGCUAGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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