miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 5' -61.7 NC_003521.1 + 120038 0.66 0.750492
Target:  5'- aGCugGUCGcGCuCGCCcaccGCGCaGUGCc -3'
miRNA:   3'- aCGugCAGC-CG-GUGGu---CGCGgCACGa -5'
13950 5' -61.7 NC_003521.1 + 187465 0.66 0.75951
Target:  5'- gGUcUGUCGGCCccuccGCCGccGCGCCG-GCg -3'
miRNA:   3'- aCGuGCAGCCGG-----UGGU--CGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 39439 0.66 0.75951
Target:  5'- cGC-UGcCGGCCGagcCCGGCGCCGaggGCc -3'
miRNA:   3'- aCGuGCaGCCGGU---GGUCGCGGCa--CGa -5'
13950 5' -61.7 NC_003521.1 + 110657 0.66 0.732186
Target:  5'- gGCACGgucaCGGCCcggucgGCCAGCGCguCGgugGCc -3'
miRNA:   3'- aCGUGCa---GCCGG------UGGUCGCG--GCa--CGa -5'
13950 5' -61.7 NC_003521.1 + 232979 0.66 0.741381
Target:  5'- gGC-CGUCcGCCACCcccucgucuucuGGCGCCGgaugGCc -3'
miRNA:   3'- aCGuGCAGcCGGUGG------------UCGCGGCa---CGa -5'
13950 5' -61.7 NC_003521.1 + 149631 0.66 0.732186
Target:  5'- cGCugGaC-GCCGCCGGCGagGUGCUc -3'
miRNA:   3'- aCGugCaGcCGGUGGUCGCggCACGA- -5'
13950 5' -61.7 NC_003521.1 + 66661 0.66 0.750492
Target:  5'- cGUGCG-CGGCCugCAG-GCCcuggagcgucacGUGCUg -3'
miRNA:   3'- aCGUGCaGCCGGugGUCgCGG------------CACGA- -5'
13950 5' -61.7 NC_003521.1 + 26250 0.66 0.732186
Target:  5'- cGCACGgaa--CGCCAGCGCUGcUGCa -3'
miRNA:   3'- aCGUGCagccgGUGGUCGCGGC-ACGa -5'
13950 5' -61.7 NC_003521.1 + 42607 0.66 0.750492
Target:  5'- -uUACcaCGGCCGCCggcGGCGCCGUcGCc -3'
miRNA:   3'- acGUGcaGCCGGUGG---UCGCGGCA-CGa -5'
13950 5' -61.7 NC_003521.1 + 196039 0.66 0.732186
Target:  5'- aGCGuuUGUCGGCCuaggGCCAGCaCCG-GCc -3'
miRNA:   3'- aCGU--GCAGCCGG----UGGUCGcGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 214012 0.66 0.780733
Target:  5'- -cUACGU-GGCCGCCaccacggccuucugcGGCGCCGUcugGCUg -3'
miRNA:   3'- acGUGCAgCCGGUGG---------------UCGCGGCA---CGA- -5'
13950 5' -61.7 NC_003521.1 + 222023 0.66 0.749585
Target:  5'- aGCAC-UUGGCCACgcgaaagCAGCGCUG-GCc -3'
miRNA:   3'- aCGUGcAGCCGGUG-------GUCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 118051 0.66 0.732186
Target:  5'- cGCAUugcucUCGGCCGCCAuCcCCGUGCc -3'
miRNA:   3'- aCGUGc----AGCCGGUGGUcGcGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 188025 0.66 0.732186
Target:  5'- cGCagGCGUCGGaCAUCAGC-CgGUGCa -3'
miRNA:   3'- aCG--UGCAGCCgGUGGUCGcGgCACGa -5'
13950 5' -61.7 NC_003521.1 + 127255 0.66 0.732186
Target:  5'- gGCuCGUCGGCguCCauGGCGCCcagGCg -3'
miRNA:   3'- aCGuGCAGCCGguGG--UCGCGGca-CGa -5'
13950 5' -61.7 NC_003521.1 + 81072 0.66 0.75951
Target:  5'- aGCACGUCGcCCAUgaAGCGCgCG-GCg -3'
miRNA:   3'- aCGUGCAGCcGGUGg-UCGCG-GCaCGa -5'
13950 5' -61.7 NC_003521.1 + 88400 0.66 0.728486
Target:  5'- gGCACGUagaGGCCGCgcucuugcacgaaGGCGCUGcGCg -3'
miRNA:   3'- aCGUGCAg--CCGGUGg------------UCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 155635 0.66 0.741381
Target:  5'- gGCgGCGgUGGUaGCagaAGCGCCGUGCUg -3'
miRNA:   3'- aCG-UGCaGCCGgUGg--UCGCGGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 89009 0.66 0.75951
Target:  5'- aUGC-CG-CGGgccCCACCGGCGCCacgGCg -3'
miRNA:   3'- -ACGuGCaGCC---GGUGGUCGCGGca-CGa -5'
13950 5' -61.7 NC_003521.1 + 30073 0.66 0.75951
Target:  5'- gUGC-CGUccccgcCGGCCGCucacgguagCAGCGCCGaggGCUg -3'
miRNA:   3'- -ACGuGCA------GCCGGUG---------GUCGCGGCa--CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.