Results 1 - 20 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13950 | 5' | -61.7 | NC_003521.1 | + | 148911 | 0.71 | 0.4603 |
Target: 5'- aGCGCcgccgCGGCaucgagCACCgcAGCGCCGUGCUg -3' miRNA: 3'- aCGUGca---GCCG------GUGG--UCGCGGCACGA- -5' |
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13950 | 5' | -61.7 | NC_003521.1 | + | 99871 | 0.73 | 0.385722 |
Target: 5'- cGCAUGgCGGCCACCgucuccauguaGGgGUCGUGCg -3' miRNA: 3'- aCGUGCaGCCGGUGG-----------UCgCGGCACGa -5' |
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13950 | 5' | -61.7 | NC_003521.1 | + | 49112 | 0.73 | 0.385722 |
Target: 5'- gUGCGCGU-GGUgACCgcGGCGCCGcUGCUg -3' miRNA: 3'- -ACGUGCAgCCGgUGG--UCGCGGC-ACGA- -5' |
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13950 | 5' | -61.7 | NC_003521.1 | + | 139186 | 0.72 | 0.42618 |
Target: 5'- cGCAUGUUGGUCugCuccuGCcCCGUGCUg -3' miRNA: 3'- aCGUGCAGCCGGugGu---CGcGGCACGA- -5' |
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13950 | 5' | -61.7 | NC_003521.1 | + | 99602 | 0.71 | 0.443055 |
Target: 5'- gGCGCGUUGGugaCCugCAGCGcCCGgcgGCg -3' miRNA: 3'- aCGUGCAGCC---GGugGUCGC-GGCa--CGa -5' |
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13950 | 5' | -61.7 | NC_003521.1 | + | 142556 | 0.71 | 0.451633 |
Target: 5'- gGCuuGUCGcCCGCCAGgcuCGCCGUGCc -3' miRNA: 3'- aCGugCAGCcGGUGGUC---GCGGCACGa -5' |
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13950 | 5' | -61.7 | NC_003521.1 | + | 154469 | 0.71 | 0.451633 |
Target: 5'- cUGUugGUCaccGGCacCGCCGGCGCCG-GCa -3' miRNA: 3'- -ACGugCAG---CCG--GUGGUCGCGGCaCGa -5' |
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13950 | 5' | -61.7 | NC_003521.1 | + | 217042 | 0.71 | 0.451633 |
Target: 5'- gGC-CGUcaCGGCCAacauaaagcCCAGCGCCGUGaCg -3' miRNA: 3'- aCGuGCA--GCCGGU---------GGUCGCGGCAC-Ga -5' |
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13950 | 5' | -61.7 | NC_003521.1 | + | 168987 | 0.71 | 0.45943 |
Target: 5'- cGCGCGUCGGUCGCgggaggcgggcgaCGGgGCCG-GCa -3' miRNA: 3'- aCGUGCAGCCGGUG-------------GUCgCGGCaCGa -5' |
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13950 | 5' | -61.7 | NC_003521.1 | + | 123675 | 0.73 | 0.355236 |
Target: 5'- cGCACGaUGGCCAUCuGCGCCaGcUGCUg -3' miRNA: 3'- aCGUGCaGCCGGUGGuCGCGG-C-ACGA- -5' |
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13950 | 5' | -61.7 | NC_003521.1 | + | 209982 | 0.73 | 0.347884 |
Target: 5'- cGgACGgcccagaCGGCCACCAGCGucCCGUGUUg -3' miRNA: 3'- aCgUGCa------GCCGGUGGUCGC--GGCACGA- -5' |
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13950 | 5' | -61.7 | NC_003521.1 | + | 57387 | 0.74 | 0.312099 |
Target: 5'- aGgGCGUCGaucucgcGCCA-CAGCGCCGUGCg -3' miRNA: 3'- aCgUGCAGC-------CGGUgGUCGCGGCACGa -5' |
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13950 | 5' | -61.7 | NC_003521.1 | + | 130348 | 0.79 | 0.157225 |
Target: 5'- gGCucaACGUgCGGCCGCaGGCGCCGUGCg -3' miRNA: 3'- aCG---UGCA-GCCGGUGgUCGCGGCACGa -5' |
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13950 | 5' | -61.7 | NC_003521.1 | + | 33010 | 0.79 | 0.161039 |
Target: 5'- cGCAgGcucUCGGCCagcuugACCAGCGCCGUGCc -3' miRNA: 3'- aCGUgC---AGCCGG------UGGUCGCGGCACGa -5' |
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13950 | 5' | -61.7 | NC_003521.1 | + | 120584 | 0.78 | 0.181385 |
Target: 5'- aUGCACGgcgCGGCCGCCGGCuccuGCCGguaGCg -3' miRNA: 3'- -ACGUGCa--GCCGGUGGUCG----CGGCa--CGa -5' |
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13950 | 5' | -61.7 | NC_003521.1 | + | 34697 | 0.78 | 0.194659 |
Target: 5'- cUGCGCGUCguaGGCgAagaCGGCGCCGUGCg -3' miRNA: 3'- -ACGUGCAG---CCGgUg--GUCGCGGCACGa -5' |
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13950 | 5' | -61.7 | NC_003521.1 | + | 74113 | 0.76 | 0.245165 |
Target: 5'- cUGCGCGaCGcCCAUgGGCGCCGUGCa -3' miRNA: 3'- -ACGUGCaGCcGGUGgUCGCGGCACGa -5' |
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13950 | 5' | -61.7 | NC_003521.1 | + | 115398 | 0.76 | 0.258804 |
Target: 5'- gGCGCGggCGGCCGCCacggccuccggacucAGCGCCGcgGCg -3' miRNA: 3'- aCGUGCa-GCCGGUGG---------------UCGCGGCa-CGa -5' |
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13950 | 5' | -61.7 | NC_003521.1 | + | 101615 | 0.75 | 0.280416 |
Target: 5'- aGgACGUCGGCCAgggcCCGGCGCUGguaGCg -3' miRNA: 3'- aCgUGCAGCCGGU----GGUCGCGGCa--CGa -5' |
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13950 | 5' | -61.7 | NC_003521.1 | + | 131473 | 0.75 | 0.280416 |
Target: 5'- gGCcuCGUCGGCCuCCuGCGCCG-GCUg -3' miRNA: 3'- aCGu-GCAGCCGGuGGuCGCGGCaCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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