miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 5' -61.7 NC_003521.1 + 81072 0.66 0.75951
Target:  5'- aGCACGUCGcCCAUgaAGCGCgCG-GCg -3'
miRNA:   3'- aCGUGCAGCcGGUGg-UCGCG-GCaCGa -5'
13950 5' -61.7 NC_003521.1 + 57182 0.66 0.75951
Target:  5'- gUGCugGaggCGGUgCugCGGCGCUGUcGCg -3'
miRNA:   3'- -ACGugCa--GCCG-GugGUCGCGGCA-CGa -5'
13950 5' -61.7 NC_003521.1 + 113300 0.66 0.75951
Target:  5'- gGCGCGUUugugaaagaGGCgCACCAGCa-CGUGCc -3'
miRNA:   3'- aCGUGCAG---------CCG-GUGGUCGcgGCACGa -5'
13950 5' -61.7 NC_003521.1 + 187465 0.66 0.75951
Target:  5'- gGUcUGUCGGCCccuccGCCGccGCGCCG-GCg -3'
miRNA:   3'- aCGuGCAGCCGG-----UGGU--CGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 39439 0.66 0.75951
Target:  5'- cGC-UGcCGGCCGagcCCGGCGCCGaggGCc -3'
miRNA:   3'- aCGuGCaGCCGGU---GGUCGCGGCa--CGa -5'
13950 5' -61.7 NC_003521.1 + 87921 0.66 0.75951
Target:  5'- -cCugGcUGGCCGCC-GCGCCGgGCa -3'
miRNA:   3'- acGugCaGCCGGUGGuCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 142878 0.66 0.75951
Target:  5'- uUGC-UGUCGGCgGgCAGCGgCGUGg- -3'
miRNA:   3'- -ACGuGCAGCCGgUgGUCGCgGCACga -5'
13950 5' -61.7 NC_003521.1 + 30073 0.66 0.75951
Target:  5'- gUGC-CGUccccgcCGGCCGCucacgguagCAGCGCCGaggGCUg -3'
miRNA:   3'- -ACGuGCA------GCCGGUG---------GUCGCGGCa--CGA- -5'
13950 5' -61.7 NC_003521.1 + 89009 0.66 0.75951
Target:  5'- aUGC-CG-CGGgccCCACCGGCGCCacgGCg -3'
miRNA:   3'- -ACGuGCaGCC---GGUGGUCGCGGca-CGa -5'
13950 5' -61.7 NC_003521.1 + 138224 0.66 0.750492
Target:  5'- -cCACGUCGGCaUACCAcacGCGCuCGgGCUc -3'
miRNA:   3'- acGUGCAGCCG-GUGGU---CGCG-GCaCGA- -5'
13950 5' -61.7 NC_003521.1 + 150249 0.66 0.750492
Target:  5'- gGCGgGUgCGcGCCGCCcGUGCUGcUGCUg -3'
miRNA:   3'- aCGUgCA-GC-CGGUGGuCGCGGC-ACGA- -5'
13950 5' -61.7 NC_003521.1 + 42607 0.66 0.750492
Target:  5'- -uUACcaCGGCCGCCggcGGCGCCGUcGCc -3'
miRNA:   3'- acGUGcaGCCGGUGG---UCGCGGCA-CGa -5'
13950 5' -61.7 NC_003521.1 + 120038 0.66 0.750492
Target:  5'- aGCugGUCGcGCuCGCCcaccGCGCaGUGCc -3'
miRNA:   3'- aCGugCAGC-CG-GUGGu---CGCGgCACGa -5'
13950 5' -61.7 NC_003521.1 + 66661 0.66 0.750492
Target:  5'- cGUGCG-CGGCCugCAG-GCCcuggagcgucacGUGCUg -3'
miRNA:   3'- aCGUGCaGCCGGugGUCgCGG------------CACGA- -5'
13950 5' -61.7 NC_003521.1 + 166866 0.66 0.750492
Target:  5'- aGCAgca-GGCCGUCGGCGCCGUGaCg -3'
miRNA:   3'- aCGUgcagCCGGUGGUCGCGGCAC-Ga -5'
13950 5' -61.7 NC_003521.1 + 28599 0.66 0.750492
Target:  5'- cGCua-UCGGCCACCGGCGguCCGcagGCc -3'
miRNA:   3'- aCGugcAGCCGGUGGUCGC--GGCa--CGa -5'
13950 5' -61.7 NC_003521.1 + 216385 0.66 0.750492
Target:  5'- cUGC-CG-CGGCCuCC-GCGCCGcGCUc -3'
miRNA:   3'- -ACGuGCaGCCGGuGGuCGCGGCaCGA- -5'
13950 5' -61.7 NC_003521.1 + 222023 0.66 0.749585
Target:  5'- aGCAC-UUGGCCACgcgaaagCAGCGCUG-GCc -3'
miRNA:   3'- aCGUGcAGCCGGUG-------GUCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 71020 0.66 0.741381
Target:  5'- aGCugGugaUCGGCCGCgGcGCGCUGcaGCUg -3'
miRNA:   3'- aCGugC---AGCCGGUGgU-CGCGGCa-CGA- -5'
13950 5' -61.7 NC_003521.1 + 103554 0.66 0.741381
Target:  5'- gGCGCGUggUGGCCuacgacgagaCGGCGCCG-GCc -3'
miRNA:   3'- aCGUGCA--GCCGGug--------GUCGCGGCaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.