Results 21 - 40 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13951 | 3' | -53.3 | NC_003521.1 | + | 108534 | 0.66 | 0.989778 |
Target: 5'- cGACGgcgaccuggUCACCCggacCCUGGCCGUAu-- -3' miRNA: 3'- aCUGCa--------AGUGGGa---GGGUUGGCGUuag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 12238 | 0.66 | 0.989778 |
Target: 5'- cGACGgcagaccUCACUCUCgcugCCgAGCUGCAGUCc -3' miRNA: 3'- aCUGCa------AGUGGGAG----GG-UUGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 118902 | 0.66 | 0.991007 |
Target: 5'- aUGAgGUccUCGCCCUCgUCGgcGCCGCGGc- -3' miRNA: 3'- -ACUgCA--AGUGGGAG-GGU--UGGCGUUag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 27837 | 0.66 | 0.992117 |
Target: 5'- gGACGUg--UUCgUCCAGCCGCGGUCu -3' miRNA: 3'- aCUGCAaguGGGaGGGUUGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 210173 | 0.66 | 0.98842 |
Target: 5'- aGACGUcUCccgagACCgUCCCGagagcacacuuACUGCGAUCa -3' miRNA: 3'- aCUGCA-AG-----UGGgAGGGU-----------UGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 116210 | 0.66 | 0.98842 |
Target: 5'- aGACG-UCGCCgUCgCCG-CCGCuucGUCg -3' miRNA: 3'- aCUGCaAGUGGgAG-GGUuGGCGu--UAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 196372 | 0.66 | 0.98842 |
Target: 5'- gUGGCGUUgUACUCgcaucgCCgAGCCGCcGUCa -3' miRNA: 3'- -ACUGCAA-GUGGGa-----GGgUUGGCGuUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 238402 | 0.66 | 0.988277 |
Target: 5'- gGGCGUcCcagcgggGCCgCUCCCAguGCuCGCGGUCg -3' miRNA: 3'- aCUGCAaG-------UGG-GAGGGU--UG-GCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 117251 | 0.66 | 0.992117 |
Target: 5'- cGGCGccgcCGCCaUCCCGccACCGCcGUCg -3' miRNA: 3'- aCUGCaa--GUGGgAGGGU--UGGCGuUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 126939 | 0.66 | 0.989778 |
Target: 5'- cUGGCGgu-GCCCUUCC-ACCGCu-UCu -3' miRNA: 3'- -ACUGCaagUGGGAGGGuUGGCGuuAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 160776 | 0.66 | 0.98842 |
Target: 5'- aGGCugcCGCCCccuccUCCC-GCCGCGGUCu -3' miRNA: 3'- aCUGcaaGUGGG-----AGGGuUGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 215934 | 0.66 | 0.99089 |
Target: 5'- cGGCGUucuggucgcgcuuUCGCUgCUCCCG-CCGCGAc- -3' miRNA: 3'- aCUGCA-------------AGUGG-GAGGGUuGGCGUUag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 49198 | 0.66 | 0.991007 |
Target: 5'- --cCGcUUCuCCCUCCCcGCCGCugauAGUCg -3' miRNA: 3'- acuGC-AAGuGGGAGGGuUGGCG----UUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 58100 | 0.66 | 0.991007 |
Target: 5'- cGGCGUUCGgCgUCaCCGGCCGagcuUCa -3' miRNA: 3'- aCUGCAAGUgGgAG-GGUUGGCguu-AG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 13199 | 0.66 | 0.98842 |
Target: 5'- aGAUGUUgcUCCUCCCGGCCcUggUCc -3' miRNA: 3'- aCUGCAAguGGGAGGGUUGGcGuuAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 179966 | 0.66 | 0.988979 |
Target: 5'- aUGACGUucugggggucuuuguUCAUgCUCUCGcggGCCGCcGUCg -3' miRNA: 3'- -ACUGCA---------------AGUGgGAGGGU---UGGCGuUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 164987 | 0.67 | 0.981554 |
Target: 5'- gGACGgacuggagaUCAUCgaUCCCAgcgaggagGCCGCGAUCg -3' miRNA: 3'- aCUGCa--------AGUGGg-AGGGU--------UGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 62914 | 0.67 | 0.981554 |
Target: 5'- cGACGa-CGCCCUCCCGcUCGCc--- -3' miRNA: 3'- aCUGCaaGUGGGAGGGUuGGCGuuag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 194493 | 0.67 | 0.980937 |
Target: 5'- cGACGacgCGCCCUCCUcgcacaagauGGCCGUcauagauucgcugcGAUCg -3' miRNA: 3'- aCUGCaa-GUGGGAGGG----------UUGGCG--------------UUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 139791 | 0.67 | 0.978994 |
Target: 5'- uUGGCG-UCGCCCUCggcgguggcgaAGCCGCcGUCg -3' miRNA: 3'- -ACUGCaAGUGGGAGgg---------UUGGCGuUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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