miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13951 3' -53.3 NC_003521.1 + 99729 0.68 0.966089
Target:  5'- aGGCGUcgUCGCgCaCCCAGCCGC--UCa -3'
miRNA:   3'- aCUGCA--AGUGgGaGGGUUGGCGuuAG- -5'
13951 3' -53.3 NC_003521.1 + 181707 0.68 0.96282
Target:  5'- aUGACGUUUucCCCUCCCuuuACaGCAcacacGUCa -3'
miRNA:   3'- -ACUGCAAGu-GGGAGGGu--UGgCGU-----UAG- -5'
13951 3' -53.3 NC_003521.1 + 224269 0.71 0.893293
Target:  5'- aGGCGcgCGCCCUcaCCCAGgUGCAcgCa -3'
miRNA:   3'- aCUGCaaGUGGGA--GGGUUgGCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 119629 0.72 0.865201
Target:  5'- gGACGUUUACCCa-CUGGCCGCGggCg -3'
miRNA:   3'- aCUGCAAGUGGGagGGUUGGCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 104709 0.72 0.841953
Target:  5'- cGACGU--GCCCUC--GACCGCGGUCu -3'
miRNA:   3'- aCUGCAagUGGGAGggUUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 18804 0.72 0.839533
Target:  5'- -uGCGUUCGCCCUgCCugcagaugcugagcGACCGCAAc- -3'
miRNA:   3'- acUGCAAGUGGGAgGG--------------UUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 138085 0.73 0.790607
Target:  5'- aGGCGcUgGCCCUCCCAgGCCGaGGUCu -3'
miRNA:   3'- aCUGCaAgUGGGAGGGU-UGGCgUUAG- -5'
13951 3' -53.3 NC_003521.1 + 204050 0.73 0.78151
Target:  5'- -cGCGUg-GCCCUgCCAgucGCCGCAGUCg -3'
miRNA:   3'- acUGCAagUGGGAgGGU---UGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 135338 0.74 0.772282
Target:  5'- gGGCGggUugCCUCCCucCCGCGcgCg -3'
miRNA:   3'- aCUGCaaGugGGAGGGuuGGCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 86695 0.74 0.753465
Target:  5'- cUGGCGcugcCGCCCUugCCCGGCCGCGAg- -3'
miRNA:   3'- -ACUGCaa--GUGGGA--GGGUUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 39299 0.71 0.898488
Target:  5'- cGGCGUcaCACUCUCCCAGgcagcaucgcgaCGCAAUCg -3'
miRNA:   3'- aCUGCAa-GUGGGAGGGUUg-----------GCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 187649 0.71 0.899764
Target:  5'- cGACGgcgUCGCcgaCCUCCUcGCCGCcGUCc -3'
miRNA:   3'- aCUGCa--AGUG---GGAGGGuUGGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 123504 0.68 0.96282
Target:  5'- gUGuCGUcgUCGCCgCUgCCGcCCGCAAUCc -3'
miRNA:   3'- -ACuGCA--AGUGG-GAgGGUuGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 120514 0.68 0.961453
Target:  5'- cGACGUggcuuuuuauagaCACCC-CCCGAgCGCGGUg -3'
miRNA:   3'- aCUGCAa------------GUGGGaGGGUUgGCGUUAg -5'
13951 3' -53.3 NC_003521.1 + 68428 0.69 0.951714
Target:  5'- cGACGgcuccgccggCGCCC-CUCAACCGCGugccgGUCa -3'
miRNA:   3'- aCUGCaa--------GUGGGaGGGUUGGCGU-----UAG- -5'
13951 3' -53.3 NC_003521.1 + 55728 0.69 0.938578
Target:  5'- cGGCGcgCAgCgCCUCCCAGCgCGCGggCg -3'
miRNA:   3'- aCUGCaaGU-G-GGAGGGUUG-GCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 196010 0.7 0.928659
Target:  5'- gUGGCGUgUCGCCCUCCgGccauCCGCucagcguuuGUCg -3'
miRNA:   3'- -ACUGCA-AGUGGGAGGgUu---GGCGu--------UAG- -5'
13951 3' -53.3 NC_003521.1 + 200165 0.7 0.917801
Target:  5'- --uCGUUUGCCCUCCUuacCCGCuGUCa -3'
miRNA:   3'- acuGCAAGUGGGAGGGuu-GGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 92549 0.7 0.912021
Target:  5'- -aGCGUUC-CCCUCCCccaacCCGgAAUCg -3'
miRNA:   3'- acUGCAAGuGGGAGGGuu---GGCgUUAG- -5'
13951 3' -53.3 NC_003521.1 + 171044 0.7 0.912021
Target:  5'- aGAUGUUCACCCccggCUCGcCCGUccGAUCa -3'
miRNA:   3'- aCUGCAAGUGGGa---GGGUuGGCG--UUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.