miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13951 5' -54.8 NC_003521.1 + 83689 0.66 0.974967
Target:  5'- cGUGAC--GUUGuGGAcgcgcgagCGGGCGUCCAa -3'
miRNA:   3'- -CAUUGaaCGAC-CCUa-------GCCCGCAGGUg -5'
13951 5' -54.8 NC_003521.1 + 137492 0.66 0.97234
Target:  5'- -cGGCcggUGCgcggGGGAUCugaaagaaGGGCGUCC-Cg -3'
miRNA:   3'- caUUGa--ACGa---CCCUAG--------CCCGCAGGuG- -5'
13951 5' -54.8 NC_003521.1 + 25652 0.66 0.97234
Target:  5'- --cGCggGuCUGGGAgcaGGGUGUCCGg -3'
miRNA:   3'- cauUGaaC-GACCCUag-CCCGCAGGUg -5'
13951 5' -54.8 NC_003521.1 + 92066 0.66 0.97234
Target:  5'- cGUAGCgaugGCggaccgGGGGUCGGGgGgUgCGCa -3'
miRNA:   3'- -CAUUGaa--CGa-----CCCUAGCCCgC-AgGUG- -5'
13951 5' -54.8 NC_003521.1 + 33467 0.66 0.96952
Target:  5'- cGUGGCccUGaCUGGaGAcccagaucUCGGGCG-CCACg -3'
miRNA:   3'- -CAUUGa-AC-GACC-CU--------AGCCCGCaGGUG- -5'
13951 5' -54.8 NC_003521.1 + 226395 0.66 0.96952
Target:  5'- ------cGCUGGuGGUgGGGCaUCCGCg -3'
miRNA:   3'- cauugaaCGACC-CUAgCCCGcAGGUG- -5'
13951 5' -54.8 NC_003521.1 + 19248 0.66 0.963275
Target:  5'- ------aGCUGGccgcugUGGGCGUCCACc -3'
miRNA:   3'- cauugaaCGACCcua---GCCCGCAGGUG- -5'
13951 5' -54.8 NC_003521.1 + 227238 0.67 0.956189
Target:  5'- uUGGCUcgGCgcgGGGGUcucugCGGGCGgcgCCGCc -3'
miRNA:   3'- cAUUGAa-CGa--CCCUA-----GCCCGCa--GGUG- -5'
13951 5' -54.8 NC_003521.1 + 181736 0.67 0.948225
Target:  5'- ------aGCUGGGAU-GGGCcGUCUGCg -3'
miRNA:   3'- cauugaaCGACCCUAgCCCG-CAGGUG- -5'
13951 5' -54.8 NC_003521.1 + 196148 0.68 0.939358
Target:  5'- -aGGCUgacGCUGGGGaUGGGCaGUCC-Cg -3'
miRNA:   3'- caUUGAa--CGACCCUaGCCCG-CAGGuG- -5'
13951 5' -54.8 NC_003521.1 + 81321 0.68 0.934579
Target:  5'- -cGACgUGCUGGGGUUGGcgcaguGCGUCaACa -3'
miRNA:   3'- caUUGaACGACCCUAGCC------CGCAGgUG- -5'
13951 5' -54.8 NC_003521.1 + 17166 0.68 0.934579
Target:  5'- gGUGAUUggagGCgcggccgagGGGGUCGaGGCGgCCGCg -3'
miRNA:   3'- -CAUUGAa---CGa--------CCCUAGC-CCGCaGGUG- -5'
13951 5' -54.8 NC_003521.1 + 193278 0.68 0.934579
Target:  5'- -gAGCgggUGCcGGGA-CGGGCGUCgGa -3'
miRNA:   3'- caUUGa--ACGaCCCUaGCCCGCAGgUg -5'
13951 5' -54.8 NC_003521.1 + 143573 0.68 0.929568
Target:  5'- ------cGCUGGcGGgcaCGGGCGUCUACc -3'
miRNA:   3'- cauugaaCGACC-CUa--GCCCGCAGGUG- -5'
13951 5' -54.8 NC_003521.1 + 45358 0.68 0.929568
Target:  5'- gGUAGCg-GCUGGGGugaUCGGGCacgcggaagauGUCCGg -3'
miRNA:   3'- -CAUUGaaCGACCCU---AGCCCG-----------CAGGUg -5'
13951 5' -54.8 NC_003521.1 + 135323 0.68 0.922163
Target:  5'- -cAACagGCcGGGGUCGGGCGgguugccucccucCCGCg -3'
miRNA:   3'- caUUGaaCGaCCCUAGCCCGCa------------GGUG- -5'
13951 5' -54.8 NC_003521.1 + 216376 0.68 0.91885
Target:  5'- -gAGCagaaggGCUGcc-UCGGGCGUCCACg -3'
miRNA:   3'- caUUGaa----CGACccuAGCCCGCAGGUG- -5'
13951 5' -54.8 NC_003521.1 + 225552 0.68 0.913142
Target:  5'- uGUGGCgaacgcGCUGGGAagaggGGGCGcCCACc -3'
miRNA:   3'- -CAUUGaa----CGACCCUag---CCCGCaGGUG- -5'
13951 5' -54.8 NC_003521.1 + 132442 0.69 0.888029
Target:  5'- gGUAGCggUGgUGGGcuguUCGGcGCGUCCGg -3'
miRNA:   3'- -CAUUGa-ACgACCCu---AGCC-CGCAGGUg -5'
13951 5' -54.8 NC_003521.1 + 53407 0.7 0.835841
Target:  5'- ---cCUUGC-GGGcGUCGGGCG-CCACc -3'
miRNA:   3'- cauuGAACGaCCC-UAGCCCGCaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.