miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13952 3' -49.4 NC_003521.1 + 11967 0.66 0.999525
Target:  5'- gAGGCCGGacgaggaAUGAGCCGguGGUGc -3'
miRNA:   3'- -UUUGGUCauug---UACUCGGUguCCAUc -5'
13952 3' -49.4 NC_003521.1 + 13301 0.67 0.998674
Target:  5'- uAGCCAGauccAACAUGAGCCugGGcugccugccGUGGc -3'
miRNA:   3'- uUUGGUCa---UUGUACUCGGugUC---------CAUC- -5'
13952 3' -49.4 NC_003521.1 + 20223 1.08 0.01833
Target:  5'- aAAACCAGUAACAUGAGCCACAGGUAGg -3'
miRNA:   3'- -UUUGGUCAUUGUACUCGGUGUCCAUC- -5'
13952 3' -49.4 NC_003521.1 + 27047 0.7 0.988028
Target:  5'- gGGGCCgaaAGUAGCGUuucaccagcgacGAGCC-CAGGUAGc -3'
miRNA:   3'- -UUUGG---UCAUUGUA------------CUCGGuGUCCAUC- -5'
13952 3' -49.4 NC_003521.1 + 28800 0.66 0.999105
Target:  5'- uGGCCAGggcgaaggccGGCAUGGGCaCGCAGGc-- -3'
miRNA:   3'- uUUGGUCa---------UUGUACUCG-GUGUCCauc -5'
13952 3' -49.4 NC_003521.1 + 29487 0.68 0.997271
Target:  5'- --cCCAGUAGaggaucucCAUGAGCUcCAGGUAc -3'
miRNA:   3'- uuuGGUCAUU--------GUACUCGGuGUCCAUc -5'
13952 3' -49.4 NC_003521.1 + 36850 0.68 0.996201
Target:  5'- -uGCCGGguagagcaccUGACGUGGGCCggcaaGCGGGUGa -3'
miRNA:   3'- uuUGGUC----------AUUGUACUCGG-----UGUCCAUc -5'
13952 3' -49.4 NC_003521.1 + 44143 0.72 0.963736
Target:  5'- -cACCGGUAGCGUGGGCgACGGcccgGGa -3'
miRNA:   3'- uuUGGUCAUUGUACUCGgUGUCca--UC- -5'
13952 3' -49.4 NC_003521.1 + 44346 0.68 0.996201
Target:  5'- uGGGCCAccGGCuUGAcCCGCAGGUAGg -3'
miRNA:   3'- -UUUGGUcaUUGuACUcGGUGUCCAUC- -5'
13952 3' -49.4 NC_003521.1 + 44632 0.66 0.99941
Target:  5'- cGGCCucgGGCGUGGGCCGCAGc--- -3'
miRNA:   3'- uUUGGucaUUGUACUCGGUGUCcauc -5'
13952 3' -49.4 NC_003521.1 + 45386 0.71 0.973125
Target:  5'- -uGCCGGUGcacgaACAUacGGcGCCGCAGGUAGc -3'
miRNA:   3'- uuUGGUCAU-----UGUA--CU-CGGUGUCCAUC- -5'
13952 3' -49.4 NC_003521.1 + 52223 0.66 0.999525
Target:  5'- gGGGCCGGUAggGCGgcGGGCUACAGuUGGg -3'
miRNA:   3'- -UUUGGUCAU--UGUa-CUCGGUGUCcAUC- -5'
13952 3' -49.4 NC_003521.1 + 73151 0.68 0.994809
Target:  5'- cAGCCcguGUAGCGUGAGCCuGC-GGUGa -3'
miRNA:   3'- uUUGGu--CAUUGUACUCGG-UGuCCAUc -5'
13952 3' -49.4 NC_003521.1 + 76182 0.66 0.999105
Target:  5'- cGGGCCu---GCGUGAggcGCCACAGGaUGGg -3'
miRNA:   3'- -UUUGGucauUGUACU---CGGUGUCC-AUC- -5'
13952 3' -49.4 NC_003521.1 + 77859 0.67 0.998674
Target:  5'- --cCCGGUGACGUGgguucGGCCACGGcGg-- -3'
miRNA:   3'- uuuGGUCAUUGUAC-----UCGGUGUC-Cauc -5'
13952 3' -49.4 NC_003521.1 + 81987 0.66 0.999525
Target:  5'- aGAGCCAGguGCu---GCCGCGGGUGu -3'
miRNA:   3'- -UUUGGUCauUGuacuCGGUGUCCAUc -5'
13952 3' -49.4 NC_003521.1 + 86184 0.67 0.997704
Target:  5'- -cACCAGcGACucgcGGGCCAC-GGUGGa -3'
miRNA:   3'- uuUGGUCaUUGua--CUCGGUGuCCAUC- -5'
13952 3' -49.4 NC_003521.1 + 103696 0.73 0.933516
Target:  5'- uGAACCacgacGGUGACGUGGGgCACAGGa-- -3'
miRNA:   3'- -UUUGG-----UCAUUGUACUCgGUGUCCauc -5'
13952 3' -49.4 NC_003521.1 + 105796 0.71 0.978316
Target:  5'- aGGACaCGGgcgcGACAUgGAGCCACAGGaAGa -3'
miRNA:   3'- -UUUG-GUCa---UUGUA-CUCGGUGUCCaUC- -5'
13952 3' -49.4 NC_003521.1 + 116024 0.66 0.999525
Target:  5'- cAGGCCgcGGUGgaagagcaucacGCAgaUGAGCCGCAGGa-- -3'
miRNA:   3'- -UUUGG--UCAU------------UGU--ACUCGGUGUCCauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.