Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13952 | 3' | -49.4 | NC_003521.1 | + | 127175 | 0.75 | 0.868912 |
Target: 5'- uGGCCG---GCAUGAGgCACAGGUAGa -3' miRNA: 3'- uUUGGUcauUGUACUCgGUGUCCAUC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 36850 | 0.68 | 0.996201 |
Target: 5'- -uGCCGGguagagcaccUGACGUGGGCCggcaaGCGGGUGa -3' miRNA: 3'- uuUGGUC----------AUUGUACUCGG-----UGUCCAUc -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 212030 | 0.68 | 0.997271 |
Target: 5'- -uGCCaAGUGGCAUGAGagggCGCGGGgcGc -3' miRNA: 3'- uuUGG-UCAUUGUACUCg---GUGUCCauC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 86184 | 0.67 | 0.997704 |
Target: 5'- -cACCAGcGACucgcGGGCCAC-GGUGGa -3' miRNA: 3'- uuUGGUCaUUGua--CUCGGUGuCCAUC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 13301 | 0.67 | 0.998674 |
Target: 5'- uAGCCAGauccAACAUGAGCCugGGcugccugccGUGGc -3' miRNA: 3'- uUUGGUCa---UUGUACUCGGugUC---------CAUC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 76182 | 0.66 | 0.999105 |
Target: 5'- cGGGCCu---GCGUGAggcGCCACAGGaUGGg -3' miRNA: 3'- -UUUGGucauUGUACU---CGGUGUCC-AUC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 81987 | 0.66 | 0.999525 |
Target: 5'- aGAGCCAGguGCu---GCCGCGGGUGu -3' miRNA: 3'- -UUUGGUCauUGuacuCGGUGUCCAUc -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 52223 | 0.66 | 0.999525 |
Target: 5'- gGGGCCGGUAggGCGgcGGGCUACAGuUGGg -3' miRNA: 3'- -UUUGGUCAU--UGUa-CUCGGUGUCcAUC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 116024 | 0.66 | 0.999525 |
Target: 5'- cAGGCCgcGGUGgaagagcaucacGCAgaUGAGCCGCAGGa-- -3' miRNA: 3'- -UUUGG--UCAU------------UGU--ACUCGGUGUCCauc -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 215425 | 0.69 | 0.991973 |
Target: 5'- cGAGCCcuccGUGaaGCA-GAGCCGCGGGUGc -3' miRNA: 3'- -UUUGGu---CAU--UGUaCUCGGUGUCCAUc -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 219182 | 0.69 | 0.991973 |
Target: 5'- --uCCAGUGGCGgcUGAGCCcCAGGc-- -3' miRNA: 3'- uuuGGUCAUUGU--ACUCGGuGUCCauc -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 167887 | 0.75 | 0.883804 |
Target: 5'- aAAGCCGGUGAauuCGUuguaGAGCgGCAGGUGGg -3' miRNA: 3'- -UUUGGUCAUU---GUA----CUCGgUGUCCAUC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 214600 | 0.74 | 0.916775 |
Target: 5'- -cACCGGU-ACGaGAGCUGCGGGUAGc -3' miRNA: 3'- uuUGGUCAuUGUaCUCGGUGUCCAUC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 103696 | 0.73 | 0.933516 |
Target: 5'- uGAACCacgacGGUGACGUGGGgCACAGGa-- -3' miRNA: 3'- -UUUGG-----UCAUUGUACUCgGUGUCCauc -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 195943 | 0.71 | 0.973125 |
Target: 5'- uAGCCGuccuGCGUGGGCCACAGGc-- -3' miRNA: 3'- uUUGGUcau-UGUACUCGGUGUCCauc -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 207042 | 0.71 | 0.975822 |
Target: 5'- --gUCGGUGGC-UGGGCCGCAGGccggAGg -3' miRNA: 3'- uuuGGUCAUUGuACUCGGUGUCCa---UC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 224563 | 0.71 | 0.978316 |
Target: 5'- gGAACCAGcGGCAgcgcAGCCGCAGGcugAGg -3' miRNA: 3'- -UUUGGUCaUUGUac--UCGGUGUCCa--UC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 27047 | 0.7 | 0.988028 |
Target: 5'- gGGGCCgaaAGUAGCGUuucaccagcgacGAGCC-CAGGUAGc -3' miRNA: 3'- -UUUGG---UCAUUGUA------------CUCGGuGUCCAUC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 137285 | 0.69 | 0.989482 |
Target: 5'- --cCCAGcGACcugGAGCUGCGGGUGGc -3' miRNA: 3'- uuuGGUCaUUGua-CUCGGUGUCCAUC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 11967 | 0.66 | 0.999525 |
Target: 5'- gAGGCCGGacgaggaAUGAGCCGguGGUGc -3' miRNA: 3'- -UUUGGUCauug---UACUCGGUguCCAUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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