Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 13952 | 5' | -60.2 | NC_003521.1 | + | 52798 | 0.66 | 0.792208 |
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Target: 5'- ---cGgUGCGGC-UCCAccuGGACCGCCu -3' miRNA: 3'- aagaCgACGCCGcAGGU---CCUGGUGGu -5' |
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| 13952 | 5' | -60.2 | NC_003521.1 | + | 108950 | 0.66 | 0.792208 |
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Target: 5'- -gCUGUcgGUGGCGUCUAuGACCACg- -3' miRNA: 3'- aaGACGa-CGCCGCAGGUcCUGGUGgu -5' |
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| 13952 | 5' | -60.2 | NC_003521.1 | + | 114965 | 0.66 | 0.774515 |
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Target: 5'- -gCUGCUGCGGCGUCagucGCCugUu -3' miRNA: 3'- aaGACGACGCCGCAGguccUGGugGu -5' |
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| 13952 | 5' | -60.2 | NC_003521.1 | + | 30425 | 0.66 | 0.800001 |
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Target: 5'- ---cGCUGCGGUcccagcugaacauGUCCAGG-CgGCCGa -3' miRNA: 3'- aagaCGACGCCG-------------CAGGUCCuGgUGGU- -5' |
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| 13952 | 5' | -60.2 | NC_003521.1 | + | 130304 | 0.66 | 0.816903 |
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Target: 5'- ---gGCcGCGGCGccgcgcaUCCAGGuCCACUAc -3' miRNA: 3'- aagaCGaCGCCGC-------AGGUCCuGGUGGU- -5' |
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| 13952 | 5' | -60.2 | NC_003521.1 | + | 222423 | 0.66 | 0.774515 |
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Target: 5'- -cCUGCUGgccacgggGGCGcUgCAGGACCAUCAu -3' miRNA: 3'- aaGACGACg-------CCGC-AgGUCCUGGUGGU- -5' |
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| 13952 | 5' | -60.2 | NC_003521.1 | + | 64623 | 0.66 | 0.774515 |
|
Target: 5'- cUCggGCaUGUccagGGCGcCCAGGGCCugCAg -3' miRNA: 3'- aAGa-CG-ACG----CCGCaGGUCCUGGugGU- -5' |
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| 13952 | 5' | -60.2 | NC_003521.1 | + | 219473 | 0.66 | 0.821034 |
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Target: 5'- cUCUGCUGCcuGGCGaCCgccaucaugggccugGGGcucaGCCGCCAc -3' miRNA: 3'- aAGACGACG--CCGCaGG---------------UCC----UGGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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