miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13952 5' -60.2 NC_003521.1 + 20188 1.06 0.002725
Target:  5'- cUUCUGCUGCGGCGUCCAGGACCACCAg -3'
miRNA:   3'- -AAGACGACGCCGCAGGUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 192741 0.75 0.303512
Target:  5'- uUUCUuuuuCUGCGGCGUCCGcGGGCCGuCCAu -3'
miRNA:   3'- -AAGAc---GACGCCGCAGGU-CCUGGU-GGU- -5'
13952 5' -60.2 NC_003521.1 + 53507 0.75 0.310297
Target:  5'- -gCUGCUGCGGCGUCgCAGcGGCCGa-- -3'
miRNA:   3'- aaGACGACGCCGCAG-GUC-CUGGUggu -5'
13952 5' -60.2 NC_003521.1 + 164548 0.73 0.384433
Target:  5'- -gCUGCUGCGGUggcuGUCCAGGAgCGgCGg -3'
miRNA:   3'- aaGACGACGCCG----CAGGUCCUgGUgGU- -5'
13952 5' -60.2 NC_003521.1 + 223859 0.73 0.392463
Target:  5'- -gCUGCUGCGGCuGUCCcucGGGuACCACg- -3'
miRNA:   3'- aaGACGACGCCG-CAGG---UCC-UGGUGgu -5'
13952 5' -60.2 NC_003521.1 + 59635 0.72 0.442864
Target:  5'- -gCUGC-GCGGCGUCCAGcGGCUggcgcGCCGc -3'
miRNA:   3'- aaGACGaCGCCGCAGGUC-CUGG-----UGGU- -5'
13952 5' -60.2 NC_003521.1 + 233061 0.72 0.451615
Target:  5'- ---cGuCUGCGGCGUCUgcuGGGACUGCCGc -3'
miRNA:   3'- aagaC-GACGCCGCAGG---UCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 59887 0.71 0.487526
Target:  5'- -cCUGCgagccGCGGuCGccgCCGGGGCCGCCGc -3'
miRNA:   3'- aaGACGa----CGCC-GCa--GGUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 57275 0.71 0.505981
Target:  5'- aUCcGCgugGCGGCGUCCGuGACCGCg- -3'
miRNA:   3'- aAGaCGa--CGCCGCAGGUcCUGGUGgu -5'
13952 5' -60.2 NC_003521.1 + 117503 0.71 0.51532
Target:  5'- ---gGCgGCGGCG-CCGGGAgCCGCCGc -3'
miRNA:   3'- aagaCGaCGCCGCaGGUCCU-GGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 127279 0.71 0.524728
Target:  5'- ---cGCgGCGGCGUCguCGGGcACCGCCAc -3'
miRNA:   3'- aagaCGaCGCCGCAG--GUCC-UGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 151327 0.7 0.543734
Target:  5'- ---gGCggGUGGCGUCCgAGGGCCugCGc -3'
miRNA:   3'- aagaCGa-CGCCGCAGG-UCCUGGugGU- -5'
13952 5' -60.2 NC_003521.1 + 118936 0.69 0.601896
Target:  5'- ---gGCgGCGGCGUCCcgucAGGGCCAgCGc -3'
miRNA:   3'- aagaCGaCGCCGCAGG----UCCUGGUgGU- -5'
13952 5' -60.2 NC_003521.1 + 144766 0.69 0.601896
Target:  5'- aUCUGCcgacaGuCGGCGUCCAGGuCCuCCu -3'
miRNA:   3'- aAGACGa----C-GCCGCAGGUCCuGGuGGu -5'
13952 5' -60.2 NC_003521.1 + 142774 0.69 0.611697
Target:  5'- gUCcGCgGCGGCGUCguCGGuGCCACCAa -3'
miRNA:   3'- aAGaCGaCGCCGCAG--GUCcUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 29476 0.69 0.615622
Target:  5'- -gCUGCUGCGggaccccaaccacucGCGcCCgcGGGACCGCCu -3'
miRNA:   3'- aaGACGACGC---------------CGCaGG--UCCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 39038 0.69 0.621512
Target:  5'- -aUUGCUG-GGCGUCUGGGugC-CCAg -3'
miRNA:   3'- aaGACGACgCCGCAGGUCCugGuGGU- -5'
13952 5' -60.2 NC_003521.1 + 144098 0.69 0.621512
Target:  5'- cUUCUGCcucaUGCGGC-UgCuGGACCGCCGc -3'
miRNA:   3'- -AAGACG----ACGCCGcAgGuCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 53396 0.69 0.630353
Target:  5'- cUUCUGCagcuccuUGCgGGCGUCgGGcGCCACCGa -3'
miRNA:   3'- -AAGACG-------ACG-CCGCAGgUCcUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 71169 0.69 0.631335
Target:  5'- cUCUGCcucuuCGGCGUCCuccAGGuCCACCu -3'
miRNA:   3'- aAGACGac---GCCGCAGG---UCCuGGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.