miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13952 5' -60.2 NC_003521.1 + 3663 0.67 0.756353
Target:  5'- gUCUGCcuCGGCGgCCGGGACCcUCGu -3'
miRNA:   3'- aAGACGacGCCGCaGGUCCUGGuGGU- -5'
13952 5' -60.2 NC_003521.1 + 20188 1.06 0.002725
Target:  5'- cUUCUGCUGCGGCGUCCAGGACCACCAg -3'
miRNA:   3'- -AAGACGACGCCGCAGGUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 29476 0.69 0.615622
Target:  5'- -gCUGCUGCGggaccccaaccacucGCGcCCgcGGGACCGCCu -3'
miRNA:   3'- aaGACGACGC---------------CGCaGG--UCCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 30425 0.66 0.800001
Target:  5'- ---cGCUGCGGUcccagcugaacauGUCCAGG-CgGCCGa -3'
miRNA:   3'- aagaCGACGCCG-------------CAGGUCCuGgUGGU- -5'
13952 5' -60.2 NC_003521.1 + 39038 0.69 0.621512
Target:  5'- -aUUGCUG-GGCGUCUGGGugC-CCAg -3'
miRNA:   3'- aaGACGACgCCGCAGGUCCugGuGGU- -5'
13952 5' -60.2 NC_003521.1 + 40752 0.66 0.774515
Target:  5'- ---cGCUGCGGCG-CCGuGGCgCGCCGc -3'
miRNA:   3'- aagaCGACGCCGCaGGUcCUG-GUGGU- -5'
13952 5' -60.2 NC_003521.1 + 43713 0.67 0.718881
Target:  5'- ---cGCUGUGaGaguUCCAGGGCCGCCGc -3'
miRNA:   3'- aagaCGACGC-Cgc-AGGUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 52798 0.66 0.792208
Target:  5'- ---cGgUGCGGC-UCCAccuGGACCGCCu -3'
miRNA:   3'- aagaCgACGCCGcAGGU---CCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 53396 0.69 0.630353
Target:  5'- cUUCUGCagcuccuUGCgGGCGUCgGGcGCCACCGa -3'
miRNA:   3'- -AAGACG-------ACG-CCGCAGgUCcUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 53507 0.75 0.310297
Target:  5'- -gCUGCUGCGGCGUCgCAGcGGCCGa-- -3'
miRNA:   3'- aaGACGACGCCGCAG-GUC-CUGGUggu -5'
13952 5' -60.2 NC_003521.1 + 57170 0.66 0.817732
Target:  5'- --gUGCUGCGGCGcugUCGcGACgGCCAg -3'
miRNA:   3'- aagACGACGCCGCa--GGUcCUGgUGGU- -5'
13952 5' -60.2 NC_003521.1 + 57275 0.71 0.505981
Target:  5'- aUCcGCgugGCGGCGUCCGuGACCGCg- -3'
miRNA:   3'- aAGaCGa--CGCCGCAGGUcCUGGUGgu -5'
13952 5' -60.2 NC_003521.1 + 59635 0.72 0.442864
Target:  5'- -gCUGC-GCGGCGUCCAGcGGCUggcgcGCCGc -3'
miRNA:   3'- aaGACGaCGCCGCAGGUC-CUGG-----UGGU- -5'
13952 5' -60.2 NC_003521.1 + 59887 0.71 0.487526
Target:  5'- -cCUGCgagccGCGGuCGccgCCGGGGCCGCCGc -3'
miRNA:   3'- aaGACGa----CGCC-GCa--GGUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 60434 0.66 0.80937
Target:  5'- gUCUGUaGCGGC-UCCAGGcguuggcgcgagGCCugCGu -3'
miRNA:   3'- aAGACGaCGCCGcAGGUCC------------UGGugGU- -5'
13952 5' -60.2 NC_003521.1 + 62313 0.69 0.650975
Target:  5'- cUUCaugGUUGCGGCGUCCgcGGGACgGgCGa -3'
miRNA:   3'- -AAGa--CGACGCCGCAGG--UCCUGgUgGU- -5'
13952 5' -60.2 NC_003521.1 + 63288 0.66 0.783424
Target:  5'- gUCcGCUGgugGGCGUCguGGgcGCCGCCGg -3'
miRNA:   3'- aAGaCGACg--CCGCAGguCC--UGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 64623 0.66 0.774515
Target:  5'- cUCggGCaUGUccagGGCGcCCAGGGCCugCAg -3'
miRNA:   3'- aAGa-CG-ACG----CCGCaGGUCCUGGugGU- -5'
13952 5' -60.2 NC_003521.1 + 66590 0.66 0.80937
Target:  5'- -gCUGCcagGCGGCcUCCAcggcuuGGAUCACCu -3'
miRNA:   3'- aaGACGa--CGCCGcAGGU------CCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 71169 0.69 0.631335
Target:  5'- cUCUGCcucuuCGGCGUCCuccAGGuCCACCu -3'
miRNA:   3'- aAGACGac---GCCGCAGG---UCCuGGUGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.