miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13952 5' -60.2 NC_003521.1 + 3663 0.67 0.756353
Target:  5'- gUCUGCcuCGGCGgCCGGGACCcUCGu -3'
miRNA:   3'- aAGACGacGCCGCaGGUCCUGGuGGU- -5'
13952 5' -60.2 NC_003521.1 + 119768 0.69 0.641159
Target:  5'- aUCUGCU-CGGCcUCCAGGcugcgguCCACCu -3'
miRNA:   3'- aAGACGAcGCCGcAGGUCCu------GGUGGu -5'
13952 5' -60.2 NC_003521.1 + 218030 0.69 0.641159
Target:  5'- gUUCUuggGCggcgGCGGCGUCCgcagguagaugAGGuCCACCGu -3'
miRNA:   3'- -AAGA---CGa---CGCCGCAGG-----------UCCuGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 169705 0.68 0.660779
Target:  5'- aUCUGCauagucGUGGCGUUCAGGugCGuCCc -3'
miRNA:   3'- aAGACGa-----CGCCGCAGGUCCugGU-GGu -5'
13952 5' -60.2 NC_003521.1 + 100437 0.68 0.680313
Target:  5'- ---aGCgGCGGCGcUCgggagCAGGGCCGCCGa -3'
miRNA:   3'- aagaCGaCGCCGC-AG-----GUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 122535 0.68 0.699702
Target:  5'- -gUUGCgGCGGCGUCCcuagAGG-UCGCCGc -3'
miRNA:   3'- aaGACGaCGCCGCAGG----UCCuGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 172956 0.67 0.71602
Target:  5'- -cCUGCUGaCGGUGuaggaggggguucaUCCGGG-CCGCCu -3'
miRNA:   3'- aaGACGAC-GCCGC--------------AGGUCCuGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 223775 0.67 0.728372
Target:  5'- ---cGCUGuCGGCG-CCGuuaccgccguGGGCCGCCAg -3'
miRNA:   3'- aagaCGAC-GCCGCaGGU----------CCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 112374 0.67 0.737787
Target:  5'- ---gGCUGCGGCGUCUcGu-CCACCu -3'
miRNA:   3'- aagaCGACGCCGCAGGuCcuGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 71169 0.69 0.631335
Target:  5'- cUCUGCcucuuCGGCGUCCuccAGGuCCACCu -3'
miRNA:   3'- aAGACGac---GCCGCAGG---UCCuGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 53396 0.69 0.630353
Target:  5'- cUUCUGCagcuccuUGCgGGCGUCgGGcGCCACCGa -3'
miRNA:   3'- -AAGACG-------ACG-CCGCAGgUCcUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 39038 0.69 0.621512
Target:  5'- -aUUGCUG-GGCGUCUGGGugC-CCAg -3'
miRNA:   3'- aaGACGACgCCGCAGGUCCugGuGGU- -5'
13952 5' -60.2 NC_003521.1 + 53507 0.75 0.310297
Target:  5'- -gCUGCUGCGGCGUCgCAGcGGCCGa-- -3'
miRNA:   3'- aaGACGACGCCGCAG-GUC-CUGGUggu -5'
13952 5' -60.2 NC_003521.1 + 223859 0.73 0.392463
Target:  5'- -gCUGCUGCGGCuGUCCcucGGGuACCACg- -3'
miRNA:   3'- aaGACGACGCCG-CAGG---UCC-UGGUGgu -5'
13952 5' -60.2 NC_003521.1 + 233061 0.72 0.451615
Target:  5'- ---cGuCUGCGGCGUCUgcuGGGACUGCCGc -3'
miRNA:   3'- aagaC-GACGCCGCAGG---UCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 151327 0.7 0.543734
Target:  5'- ---gGCggGUGGCGUCCgAGGGCCugCGc -3'
miRNA:   3'- aagaCGa-CGCCGCAGG-UCCUGGugGU- -5'
13952 5' -60.2 NC_003521.1 + 118936 0.69 0.601896
Target:  5'- ---gGCgGCGGCGUCCcgucAGGGCCAgCGc -3'
miRNA:   3'- aagaCGaCGCCGCAGG----UCCUGGUgGU- -5'
13952 5' -60.2 NC_003521.1 + 142774 0.69 0.611697
Target:  5'- gUCcGCgGCGGCGUCguCGGuGCCACCAa -3'
miRNA:   3'- aAGaCGaCGCCGCAG--GUCcUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 29476 0.69 0.615622
Target:  5'- -gCUGCUGCGggaccccaaccacucGCGcCCgcGGGACCGCCu -3'
miRNA:   3'- aaGACGACGC---------------CGCaGG--UCCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 144098 0.69 0.621512
Target:  5'- cUUCUGCcucaUGCGGC-UgCuGGACCGCCGc -3'
miRNA:   3'- -AAGACG----ACGCCGcAgGuCCUGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.