miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13952 5' -60.2 NC_003521.1 + 114965 0.66 0.774515
Target:  5'- -gCUGCUGCGGCGUCagucGCCugUu -3'
miRNA:   3'- aaGACGACGCCGCAGguccUGGugGu -5'
13952 5' -60.2 NC_003521.1 + 64623 0.66 0.774515
Target:  5'- cUCggGCaUGUccagGGCGcCCAGGGCCugCAg -3'
miRNA:   3'- aAGa-CG-ACG----CCGCaGGUCCUGGugGU- -5'
13952 5' -60.2 NC_003521.1 + 40752 0.66 0.774515
Target:  5'- ---cGCUGCGGCG-CCGuGGCgCGCCGc -3'
miRNA:   3'- aagaCGACGCCGCaGGUcCUG-GUGGU- -5'
13952 5' -60.2 NC_003521.1 + 224366 0.67 0.765489
Target:  5'- --aUGC-GCGGCGagUUCGGcGACCGCCGg -3'
miRNA:   3'- aagACGaCGCCGC--AGGUC-CUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 116828 0.67 0.76458
Target:  5'- -gCUGCaGCGGUuUCCAGaccugacGGCCGCCGa -3'
miRNA:   3'- aaGACGaCGCCGcAGGUC-------CUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 3663 0.67 0.756353
Target:  5'- gUCUGCcuCGGCGgCCGGGACCcUCGu -3'
miRNA:   3'- aAGACGacGCCGCaGGUCCUGGuGGU- -5'
13952 5' -60.2 NC_003521.1 + 136974 0.67 0.747116
Target:  5'- -gCUGCcaguccucgGCGGCGUCCugcucGGGcCCGCCc -3'
miRNA:   3'- aaGACGa--------CGCCGCAGG-----UCCuGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 73072 0.67 0.737787
Target:  5'- -gCUGCUGCugguggugguaGGCGUgCGGGucuuggagcuguGCCGCCGa -3'
miRNA:   3'- aaGACGACG-----------CCGCAgGUCC------------UGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 122930 0.67 0.737787
Target:  5'- --gUGCUG-GGCGccucgaucgcgcUCCAGGACCugCu -3'
miRNA:   3'- aagACGACgCCGC------------AGGUCCUGGugGu -5'
13952 5' -60.2 NC_003521.1 + 112374 0.67 0.737787
Target:  5'- ---gGCUGCGGCGUCUcGu-CCACCu -3'
miRNA:   3'- aagaCGACGCCGCAGGuCcuGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 223775 0.67 0.728372
Target:  5'- ---cGCUGuCGGCG-CCGuuaccgccguGGGCCGCCAg -3'
miRNA:   3'- aagaCGAC-GCCGCaGGU----------CCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 164795 0.67 0.718881
Target:  5'- -gCUGCUGCGa-GUCCGGGuCCGgCAg -3'
miRNA:   3'- aaGACGACGCcgCAGGUCCuGGUgGU- -5'
13952 5' -60.2 NC_003521.1 + 181229 0.67 0.718881
Target:  5'- ---aGCUGCaGGUGgagaUCCAGGACC-CCGc -3'
miRNA:   3'- aagaCGACG-CCGC----AGGUCCUGGuGGU- -5'
13952 5' -60.2 NC_003521.1 + 43713 0.67 0.718881
Target:  5'- ---cGCUGUGaGaguUCCAGGGCCGCCGc -3'
miRNA:   3'- aagaCGACGC-Cgc-AGGUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 76253 0.67 0.718881
Target:  5'- --gUGCUGaCGGCGcCCggcgAGGGCCGCUc -3'
miRNA:   3'- aagACGAC-GCCGCaGG----UCCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 172956 0.67 0.71602
Target:  5'- -cCUGCUGaCGGUGuaggaggggguucaUCCGGG-CCGCCu -3'
miRNA:   3'- aaGACGAC-GCCGC--------------AGGUCCuGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 174954 0.68 0.699702
Target:  5'- ---gGCUGCaGUGUCUgaAGGACCugCAu -3'
miRNA:   3'- aagaCGACGcCGCAGG--UCCUGGugGU- -5'
13952 5' -60.2 NC_003521.1 + 122535 0.68 0.699702
Target:  5'- -gUUGCgGCGGCGUCCcuagAGG-UCGCCGc -3'
miRNA:   3'- aaGACGaCGCCGCAGG----UCCuGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 226636 0.68 0.69003
Target:  5'- -cCUGCgGCGGCGUCa---GCCGCCGc -3'
miRNA:   3'- aaGACGaCGCCGCAGguccUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 218765 0.68 0.687119
Target:  5'- -cCUGCUGgccUGGUucgccuuucccgacGUCCGGGGCCACUg -3'
miRNA:   3'- aaGACGAC---GCCG--------------CAGGUCCUGGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.