miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13953 3' -48.2 NC_003521.1 + 23873 1.12 0.019314
Target:  5'- cCCGUGAUGCCGAUGAAGGACAUUUCUg -3'
miRNA:   3'- -GGCACUACGGCUACUUCCUGUAAAGA- -5'
13953 3' -48.2 NC_003521.1 + 89277 0.82 0.674196
Target:  5'- gCCGUGgcGCCGGUGggGcccgcGGCAUUUCUg -3'
miRNA:   3'- -GGCACuaCGGCUACuuC-----CUGUAAAGA- -5'
13953 3' -48.2 NC_003521.1 + 38741 0.79 0.820109
Target:  5'- gCGUGcUGCCGAUGGAGGAUuuaUUCg -3'
miRNA:   3'- gGCACuACGGCUACUUCCUGua-AAGa -5'
13953 3' -48.2 NC_003521.1 + 85845 0.76 0.927481
Target:  5'- uCCGUGGUGgUGGUGggGGGCGg---- -3'
miRNA:   3'- -GGCACUACgGCUACuuCCUGUaaaga -5'
13953 3' -48.2 NC_003521.1 + 127366 0.73 0.974941
Target:  5'- uCCGUGGUGCgcggcaggugcgUGAUGAAGGGCGg---- -3'
miRNA:   3'- -GGCACUACG------------GCUACUUCCUGUaaaga -5'
13953 3' -48.2 NC_003521.1 + 170190 0.72 0.988838
Target:  5'- gCgGUGGUGCCGGUGGAGGuagugGCAc---- -3'
miRNA:   3'- -GgCACUACGGCUACUUCC-----UGUaaaga -5'
13953 3' -48.2 NC_003521.1 + 91600 0.72 0.990191
Target:  5'- aCGaGGUGCCGAUGGgcGGGAUAgaaugUUCg -3'
miRNA:   3'- gGCaCUACGGCUACU--UCCUGUa----AAGa -5'
13953 3' -48.2 NC_003521.1 + 154800 0.71 0.993492
Target:  5'- aCCGUGGUGCCGGUGAucacGCAg---- -3'
miRNA:   3'- -GGCACUACGGCUACUucc-UGUaaaga -5'
13953 3' -48.2 NC_003521.1 + 152481 0.7 0.996975
Target:  5'- gCGUGAUGgacuucaCGGUGAAGGACGa---- -3'
miRNA:   3'- gGCACUACg------GCUACUUCCUGUaaaga -5'
13953 3' -48.2 NC_003521.1 + 62605 0.7 0.997843
Target:  5'- aCCGUGcUGCCGA---AGGACGagUCg -3'
miRNA:   3'- -GGCACuACGGCUacuUCCUGUaaAGa -5'
13953 3' -48.2 NC_003521.1 + 172552 0.7 0.997843
Target:  5'- cCUGgugGAUGCUGGggauguUGAAGGGCAggUUCUu -3'
miRNA:   3'- -GGCa--CUACGGCU------ACUUCCUGUa-AAGA- -5'
13953 3' -48.2 NC_003521.1 + 37479 0.69 0.998749
Target:  5'- aCCGUGGUGCCGc---AGGGCAc---- -3'
miRNA:   3'- -GGCACUACGGCuacuUCCUGUaaaga -5'
13953 3' -48.2 NC_003521.1 + 112743 0.68 0.999638
Target:  5'- gCGUGAUGCCGAaGuAGGugGc---- -3'
miRNA:   3'- gGCACUACGGCUaCuUCCugUaaaga -5'
13953 3' -48.2 NC_003521.1 + 127177 0.67 0.999821
Target:  5'- gCUGcUGAgcgaGCUGGUGGAGGACA--UCg -3'
miRNA:   3'- -GGC-ACUa---CGGCUACUUCCUGUaaAGa -5'
13953 3' -48.2 NC_003521.1 + 119401 0.67 0.99986
Target:  5'- gCCGUGAUGCgCGGUGAGGuauccgaguuccGACcccagUCg -3'
miRNA:   3'- -GGCACUACG-GCUACUUC------------CUGuaa--AGa -5'
13953 3' -48.2 NC_003521.1 + 155721 0.67 0.99986
Target:  5'- gCCGcUGccgccGCCGAUGggGGA-GUUUCg -3'
miRNA:   3'- -GGC-ACua---CGGCUACuuCCUgUAAAGa -5'
13953 3' -48.2 NC_003521.1 + 191082 0.67 0.999891
Target:  5'- aCCGUGGUGgCGgcGgcGGGCugcgUCUc -3'
miRNA:   3'- -GGCACUACgGCuaCuuCCUGuaa-AGA- -5'
13953 3' -48.2 NC_003521.1 + 45739 0.67 0.999891
Target:  5'- gCCGUGGUgguggGCCgGGUGAAGGugAc---- -3'
miRNA:   3'- -GGCACUA-----CGG-CUACUUCCugUaaaga -5'
13953 3' -48.2 NC_003521.1 + 87363 0.67 0.999916
Target:  5'- cCCGagGAggagGCCGAggUGGAGGACGa---- -3'
miRNA:   3'- -GGCa-CUa---CGGCU--ACUUCCUGUaaaga -5'
13953 3' -48.2 NC_003521.1 + 85478 0.67 0.999925
Target:  5'- gUCGUGGUGCCGGUGcccgcgcccccgccGGGACccgcggUCg -3'
miRNA:   3'- -GGCACUACGGCUACu-------------UCCUGuaa---AGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.