Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13953 | 3' | -48.2 | NC_003521.1 | + | 154800 | 0.71 | 0.993492 |
Target: 5'- aCCGUGGUGCCGGUGAucacGCAg---- -3' miRNA: 3'- -GGCACUACGGCUACUucc-UGUaaaga -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 91600 | 0.72 | 0.990191 |
Target: 5'- aCGaGGUGCCGAUGGgcGGGAUAgaaugUUCg -3' miRNA: 3'- gGCaCUACGGCUACU--UCCUGUa----AAGa -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 170190 | 0.72 | 0.988838 |
Target: 5'- gCgGUGGUGCCGGUGGAGGuagugGCAc---- -3' miRNA: 3'- -GgCACUACGGCUACUUCC-----UGUaaaga -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 127366 | 0.73 | 0.974941 |
Target: 5'- uCCGUGGUGCgcggcaggugcgUGAUGAAGGGCGg---- -3' miRNA: 3'- -GGCACUACG------------GCUACUUCCUGUaaaga -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 85845 | 0.76 | 0.927481 |
Target: 5'- uCCGUGGUGgUGGUGggGGGCGg---- -3' miRNA: 3'- -GGCACUACgGCUACuuCCUGUaaaga -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 38741 | 0.79 | 0.820109 |
Target: 5'- gCGUGcUGCCGAUGGAGGAUuuaUUCg -3' miRNA: 3'- gGCACuACGGCUACUUCCUGua-AAGa -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 89277 | 0.82 | 0.674196 |
Target: 5'- gCCGUGgcGCCGGUGggGcccgcGGCAUUUCUg -3' miRNA: 3'- -GGCACuaCGGCUACuuC-----CUGUAAAGA- -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 23873 | 1.12 | 0.019314 |
Target: 5'- cCCGUGAUGCCGAUGAAGGACAUUUCUg -3' miRNA: 3'- -GGCACUACGGCUACUUCCUGUAAAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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