miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13953 5' -44.1 NC_003521.1 + 34120 0.66 1
Target:  5'- --cGUAACGAAagUCGUCGAUgAgCAg -3'
miRNA:   3'- uuuCAUUGCUUgaAGCAGCUAgUaGU- -5'
13953 5' -44.1 NC_003521.1 + 63429 0.66 1
Target:  5'- -uAGUcugGGGCggcgCGUCGAUCGUCAg -3'
miRNA:   3'- uuUCAuugCUUGaa--GCAGCUAGUAGU- -5'
13953 5' -44.1 NC_003521.1 + 170750 0.67 1
Target:  5'- --cGUGACGAuCUUCG-CGAUCGc-- -3'
miRNA:   3'- uuuCAUUGCUuGAAGCaGCUAGUagu -5'
13953 5' -44.1 NC_003521.1 + 159857 0.66 1
Target:  5'- --cGUAACGGuuGCUucuccucaUCGUCG-UCAUCGg -3'
miRNA:   3'- uuuCAUUGCU--UGA--------AGCAGCuAGUAGU- -5'
13953 5' -44.1 NC_003521.1 + 98023 0.68 1
Target:  5'- -uGGUGACGAugU-CGUCGucacCAUCGc -3'
miRNA:   3'- uuUCAUUGCUugAaGCAGCua--GUAGU- -5'
13953 5' -44.1 NC_003521.1 + 3904 0.68 1
Target:  5'- uGAGUGcacccggaACGAugUUUGuUCGAUCGUUAu -3'
miRNA:   3'- uUUCAU--------UGCUugAAGC-AGCUAGUAGU- -5'
13953 5' -44.1 NC_003521.1 + 234220 0.68 0.999998
Target:  5'- uGGGUAGCGGAUc-CGUCG-UCGUCGu -3'
miRNA:   3'- uUUCAUUGCUUGaaGCAGCuAGUAGU- -5'
13953 5' -44.1 NC_003521.1 + 105201 0.69 0.999996
Target:  5'- cGAGUAACcGACggCGUCGcgcucGUCGUCAu -3'
miRNA:   3'- uUUCAUUGcUUGaaGCAGC-----UAGUAGU- -5'
13953 5' -44.1 NC_003521.1 + 142000 0.69 0.999995
Target:  5'- --cGUGAUGAGCccggCGUCGGUCAa-- -3'
miRNA:   3'- uuuCAUUGCUUGaa--GCAGCUAGUagu -5'
13953 5' -44.1 NC_003521.1 + 179852 0.7 0.999972
Target:  5'- -uAGUAACGGAUgugaUCGUCG-UCGUCc -3'
miRNA:   3'- uuUCAUUGCUUGa---AGCAGCuAGUAGu -5'
13953 5' -44.1 NC_003521.1 + 58164 0.7 0.999972
Target:  5'- -cGGUAGCGGGCcaCGUUGA-CAUCAu -3'
miRNA:   3'- uuUCAUUGCUUGaaGCAGCUaGUAGU- -5'
13953 5' -44.1 NC_003521.1 + 239531 0.71 0.999949
Target:  5'- --cGUAGCGGAaccaUUCGUCGG-CGUCGc -3'
miRNA:   3'- uuuCAUUGCUUg---AAGCAGCUaGUAGU- -5'
13953 5' -44.1 NC_003521.1 + 201784 0.71 0.999949
Target:  5'- --cGUAGCGGAaccaUUCGUCGG-CGUCGc -3'
miRNA:   3'- uuuCAUUGCUUg---AAGCAGCUaGUAGU- -5'
13953 5' -44.1 NC_003521.1 + 110360 0.71 0.999882
Target:  5'- aAGAGcaggAGCGcuGGCgcgUCGUCGAUCGUCGc -3'
miRNA:   3'- -UUUCa---UUGC--UUGa--AGCAGCUAGUAGU- -5'
13953 5' -44.1 NC_003521.1 + 210917 0.72 0.999746
Target:  5'- ---uUGACGGccACgggUCGUCGGUCGUCGu -3'
miRNA:   3'- uuucAUUGCU--UGa--AGCAGCUAGUAGU- -5'
13953 5' -44.1 NC_003521.1 + 220152 0.73 0.999208
Target:  5'- gAAGGUGAUGAACagCGccaCGGUCAUCAc -3'
miRNA:   3'- -UUUCAUUGCUUGaaGCa--GCUAGUAGU- -5'
13953 5' -44.1 NC_003521.1 + 23836 1.07 0.07943
Target:  5'- cAAAGUAACGAACUUCGUCGAUCAUCAc -3'
miRNA:   3'- -UUUCAUUGCUUGAAGCAGCUAGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.