miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 3' -53.3 NC_003521.1 + 204557 0.66 0.995237
Target:  5'- cCCGCCGG-UCGUCGGcaugccggucauGUCGagCGCcGUc -3'
miRNA:   3'- -GGCGGCUaAGUAGCC------------UAGCa-GCGaCA- -5'
13954 3' -53.3 NC_003521.1 + 137071 0.66 0.994505
Target:  5'- aCGCCGGggUCGUCGGcgggcagCGUgaccgugagccCGCUGUc -3'
miRNA:   3'- gGCGGCUa-AGUAGCCua-----GCA-----------GCGACA- -5'
13954 3' -53.3 NC_003521.1 + 239527 0.66 0.994505
Target:  5'- gCGCCGuagcggaaccAUUCGUCGG--CGUCGCgGg -3'
miRNA:   3'- gGCGGC----------UAAGUAGCCuaGCAGCGaCa -5'
13954 3' -53.3 NC_003521.1 + 82527 0.66 0.994505
Target:  5'- cCUGCUGAgUCGUcCGGGUgGUCGUa-- -3'
miRNA:   3'- -GGCGGCUaAGUA-GCCUAgCAGCGaca -5'
13954 3' -53.3 NC_003521.1 + 105194 0.66 0.994505
Target:  5'- cCCGCCGA-UCGUgGGAUCcgcccgcgaGCUGc -3'
miRNA:   3'- -GGCGGCUaAGUAgCCUAGcag------CGACa -5'
13954 3' -53.3 NC_003521.1 + 201788 0.66 0.994505
Target:  5'- gCGCCGuagcggaaccAUUCGUCGG--CGUCGCgGg -3'
miRNA:   3'- gGCGGC----------UAAGUAGCCuaGCAGCGaCa -5'
13954 3' -53.3 NC_003521.1 + 210920 0.66 0.993685
Target:  5'- aCgGCCacGggUCGUCGGucGUCGUCGCccagGUg -3'
miRNA:   3'- -GgCGG--CuaAGUAGCC--UAGCAGCGa---CA- -5'
13954 3' -53.3 NC_003521.1 + 31363 0.66 0.993685
Target:  5'- gCGCCGcgUgUAcCGGccgccgccGUCGUCGCUGUu -3'
miRNA:   3'- gGCGGCuaA-GUaGCC--------UAGCAGCGACA- -5'
13954 3' -53.3 NC_003521.1 + 74143 0.66 0.993685
Target:  5'- uUGCgGAUcUCGggCGGGgggaggcucUCGUCGCUGUg -3'
miRNA:   3'- gGCGgCUA-AGUa-GCCU---------AGCAGCGACA- -5'
13954 3' -53.3 NC_003521.1 + 83019 0.66 0.99342
Target:  5'- cCCGCCGGUcgcgcgugaucUCGUcccgcaagCGGAcccgcaacgcagccUCGUUGCUGg -3'
miRNA:   3'- -GGCGGCUA-----------AGUA--------GCCU--------------AGCAGCGACa -5'
13954 3' -53.3 NC_003521.1 + 192681 0.66 0.992769
Target:  5'- cUCGCCGAUguaCA-CGGAggugcacaggUCGUCGCg-- -3'
miRNA:   3'- -GGCGGCUAa--GUaGCCU----------AGCAGCGaca -5'
13954 3' -53.3 NC_003521.1 + 86446 0.66 0.992769
Target:  5'- aCGUCGAUgagGUCGuGAUCGuuguagUCGCUGg -3'
miRNA:   3'- gGCGGCUAag-UAGC-CUAGC------AGCGACa -5'
13954 3' -53.3 NC_003521.1 + 237329 0.66 0.992769
Target:  5'- aCCGCCGcAUgc-UCGGAcacaugcgUCGUCGCg-- -3'
miRNA:   3'- -GGCGGC-UAaguAGCCU--------AGCAGCGaca -5'
13954 3' -53.3 NC_003521.1 + 143151 0.66 0.99175
Target:  5'- gCGCCGcucucCAagGGAUCGcCGCUGc -3'
miRNA:   3'- gGCGGCuaa--GUagCCUAGCaGCGACa -5'
13954 3' -53.3 NC_003521.1 + 16945 0.66 0.99175
Target:  5'- aCCGCCGuuacCGUCGGGga-UUGCUGg -3'
miRNA:   3'- -GGCGGCuaa-GUAGCCUagcAGCGACa -5'
13954 3' -53.3 NC_003521.1 + 167086 0.66 0.990621
Target:  5'- aCCGUCG--UCGccUGGAUCGUCGCa-- -3'
miRNA:   3'- -GGCGGCuaAGUa-GCCUAGCAGCGaca -5'
13954 3' -53.3 NC_003521.1 + 71627 0.67 0.989374
Target:  5'- gCgGCgGGUUCGUCGccaggcgcGUCGUCGUUGg -3'
miRNA:   3'- -GgCGgCUAAGUAGCc-------UAGCAGCGACa -5'
13954 3' -53.3 NC_003521.1 + 192290 0.67 0.989374
Target:  5'- aCGCCG-UUCGUCGGcacCGUcCGCgGUa -3'
miRNA:   3'- gGCGGCuAAGUAGCCua-GCA-GCGaCA- -5'
13954 3' -53.3 NC_003521.1 + 5554 0.67 0.986494
Target:  5'- gCCGCCGccaUCGUUGuuccGUcCGUCGCUGUc -3'
miRNA:   3'- -GGCGGCua-AGUAGCc---UA-GCAGCGACA- -5'
13954 3' -53.3 NC_003521.1 + 195499 0.67 0.986494
Target:  5'- cUCG-UGAUcaucaUCAUCGGcgUGUCGCUGg -3'
miRNA:   3'- -GGCgGCUA-----AGUAGCCuaGCAGCGACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.