miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13955 3' -49.8 NC_003521.1 + 216284 0.66 0.999351
Target:  5'- gGCC-CUGGGCCcuGCGcuugCUGGUGGGc -3'
miRNA:   3'- -CGGaGACUUGGu-CGCaa--GAUCACUUu -5'
13955 3' -49.8 NC_003521.1 + 139080 0.66 0.999202
Target:  5'- gGCCUCggggcUGGACUAcGUGUUCggcGUGAAGg -3'
miRNA:   3'- -CGGAG-----ACUUGGU-CGCAAGau-CACUUU- -5'
13955 3' -49.8 NC_003521.1 + 212963 0.66 0.999185
Target:  5'- aGgCUCUGAGgauuuaucuuugcCCAGCGgcucgccCUGGUGAAAc -3'
miRNA:   3'- -CgGAGACUU-------------GGUCGCaa-----GAUCACUUU- -5'
13955 3' -49.8 NC_003521.1 + 62039 0.66 0.999024
Target:  5'- cGCCg--GAGCCGGCGgcggUCccGGUGAc- -3'
miRNA:   3'- -CGGagaCUUGGUCGCa---AGa-UCACUuu -5'
13955 3' -49.8 NC_003521.1 + 153627 0.66 0.998814
Target:  5'- aGCUcCUGcGCCAGCGggugcgUCUcGGUGGAGc -3'
miRNA:   3'- -CGGaGACuUGGUCGCa-----AGA-UCACUUU- -5'
13955 3' -49.8 NC_003521.1 + 101530 0.67 0.998275
Target:  5'- cGCgCUCUGGGCCAGCc-UCUGGa---- -3'
miRNA:   3'- -CG-GAGACUUGGUCGcaAGAUCacuuu -5'
13955 3' -49.8 NC_003521.1 + 104059 0.67 0.997543
Target:  5'- cGCCgUCUGcGCCAGCacgUUGGUGAc- -3'
miRNA:   3'- -CGG-AGACuUGGUCGcaaGAUCACUuu -5'
13955 3' -49.8 NC_003521.1 + 207175 0.67 0.997543
Target:  5'- gGCCgUCUGAAuCCAGCGggau-GUGAGc -3'
miRNA:   3'- -CGG-AGACUU-GGUCGCaagauCACUUu -5'
13955 3' -49.8 NC_003521.1 + 118676 0.67 0.99709
Target:  5'- gGCUUCggGAGgCGGCGguaccgCUGGUGGAGg -3'
miRNA:   3'- -CGGAGa-CUUgGUCGCaa----GAUCACUUU- -5'
13955 3' -49.8 NC_003521.1 + 104751 0.7 0.98593
Target:  5'- gGCCUCUGucgcGGCCAGCcacUUGGUGggGg -3'
miRNA:   3'- -CGGAGAC----UUGGUCGcaaGAUCACuuU- -5'
13955 3' -49.8 NC_003521.1 + 46113 0.7 0.977696
Target:  5'- cGCCUCcGGACgCAGCGUUCgcagGGAGg -3'
miRNA:   3'- -CGGAGaCUUG-GUCGCAAGaucaCUUU- -5'
13955 3' -49.8 NC_003521.1 + 231410 0.74 0.8902
Target:  5'- gGCCgUCUucGCCAGCGUcuUCUGGUGGc- -3'
miRNA:   3'- -CGG-AGAcuUGGUCGCA--AGAUCACUuu -5'
13955 3' -49.8 NC_003521.1 + 25294 0.77 0.772457
Target:  5'- gGCCUgUGuAACUAGCcUUCUAGUGAAAg -3'
miRNA:   3'- -CGGAgAC-UUGGUCGcAAGAUCACUUU- -5'
13955 3' -49.8 NC_003521.1 + 25603 1.09 0.015587
Target:  5'- aGCCUCUGAACCAGCGUUCUAGUGAAAu -3'
miRNA:   3'- -CGGAGACUUGGUCGCAAGAUCACUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.