miRNA display CGI


Results 61 - 80 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 186362 0.67 0.997767
Target:  5'- gCGGCAGgcGucGAuaaCCAUCGCC--CCg -3'
miRNA:   3'- gGUCGUCuuCuuCU---GGUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 205222 0.67 0.997767
Target:  5'- gCCGGCAGGcggaucAGggGACCcAUCGaagcCCa -3'
miRNA:   3'- -GGUCGUCU------UCuuCUGG-UAGCggaaGG- -5'
13958 3' -50.9 NC_003521.1 + 62798 0.67 0.997767
Target:  5'- cCCGGCGucuuuGAcGACCGUgGCCgccUCCg -3'
miRNA:   3'- -GGUCGUcuu--CUuCUGGUAgCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 61072 0.67 0.996893
Target:  5'- gCCAGCAGcggcucguagGAGAcgGGACCGUCGgaaagCCg -3'
miRNA:   3'- -GGUCGUC----------UUCU--UCUGGUAGCggaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 188106 0.67 0.996893
Target:  5'- --cGguGAGGAAGGCCGUcCGCaacgCCc -3'
miRNA:   3'- gguCguCUUCUUCUGGUA-GCGgaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 147083 0.67 0.996893
Target:  5'- cCCAGaCAGgcGGAGcGCuCGUCGUCcaggUCCg -3'
miRNA:   3'- -GGUC-GUCuuCUUC-UG-GUAGCGGa---AGG- -5'
13958 3' -50.9 NC_003521.1 + 44940 0.67 0.99736
Target:  5'- gUAGCAGAAGuacAGGUCGUCGCagagCCg -3'
miRNA:   3'- gGUCGUCUUCu--UCUGGUAGCGgaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 220273 0.67 0.99736
Target:  5'- --uGCAGAAGcuGAUCAUgacgcugagCGCCUUCUc -3'
miRNA:   3'- gguCGUCUUCuuCUGGUA---------GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 215090 0.67 0.996893
Target:  5'- aCAGCAu-GGAAccGCCGUCGCCgcgCCc -3'
miRNA:   3'- gGUCGUcuUCUUc-UGGUAGCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 137330 0.67 0.99736
Target:  5'- -uGGCGGAAGAcagcagGGGCCGggcggUGCCUgagucagCCg -3'
miRNA:   3'- ggUCGUCUUCU------UCUGGUa----GCGGAa------GG- -5'
13958 3' -50.9 NC_003521.1 + 143865 0.67 0.99736
Target:  5'- gCAGCAGccGguGGCCGUCaGCagUCCg -3'
miRNA:   3'- gGUCGUCuuCuuCUGGUAG-CGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 21496 0.67 0.99636
Target:  5'- gCCAGCAGggGuu--CUguGUCGCuCUUUCg -3'
miRNA:   3'- -GGUCGUCuuCuucuGG--UAGCG-GAAGG- -5'
13958 3' -50.9 NC_003521.1 + 72407 0.67 0.995558
Target:  5'- aCCAGCggcggaggcacugaGGAAGAGGGCgAguccUCGCCgUCg -3'
miRNA:   3'- -GGUCG--------------UCUUCUUCUGgU----AGCGGaAGg -5'
13958 3' -50.9 NC_003521.1 + 104030 0.67 0.99569
Target:  5'- aCCAGCAGggGGuacacgcAGugcuCCGaCGCCgUCUg -3'
miRNA:   3'- -GGUCGUCuuCU-------UCu---GGUaGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 115352 0.67 0.995755
Target:  5'- aCAGCAcAGGAGGucACgCGUCGCUggCCa -3'
miRNA:   3'- gGUCGUcUUCUUC--UG-GUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 123788 0.67 0.995755
Target:  5'- aCCAcGCAGAGGAu-GCCucguUCGCggUCCu -3'
miRNA:   3'- -GGU-CGUCUUCUucUGGu---AGCGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 172963 0.67 0.995755
Target:  5'- aCGGUguaGGAGGggGuucauCCGggcCGCCUUCUg -3'
miRNA:   3'- gGUCG---UCUUCuuCu----GGUa--GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 220810 0.67 0.99736
Target:  5'- cUCAGCGGAgugcGGuGGAUC-UCGCCggcgCCa -3'
miRNA:   3'- -GGUCGUCU----UCuUCUGGuAGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 103191 0.67 0.996245
Target:  5'- uCCAGCgAGAAGuagcgcuccauGACCuggaugagGUCGCCggCCa -3'
miRNA:   3'- -GGUCG-UCUUCuu---------CUGG--------UAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 195994 0.67 0.99636
Target:  5'- aCCAGCcccAGGAGcuguGGCgUGUCGCCcUCCg -3'
miRNA:   3'- -GGUCG---UCUUCuu--CUG-GUAGCGGaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.