miRNA display CGI


Results 81 - 100 of 216 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 68683 0.67 0.995755
Target:  5'- gCCGGCGGA-----GCCGUCGCCgcgggacCCg -3'
miRNA:   3'- -GGUCGUCUucuucUGGUAGCGGaa-----GG- -5'
13958 3' -50.9 NC_003521.1 + 45235 0.67 0.99736
Target:  5'- gCGGCAGGGuucGggGAUCgcgguGUCGCCgcccUUCCu -3'
miRNA:   3'- gGUCGUCUU---CuuCUGG-----UAGCGG----AAGG- -5'
13958 3' -50.9 NC_003521.1 + 21496 0.67 0.99636
Target:  5'- gCCAGCAGggGuu--CUguGUCGCuCUUUCg -3'
miRNA:   3'- -GGUCGUCuuCuucuGG--UAGCG-GAAGG- -5'
13958 3' -50.9 NC_003521.1 + 196321 0.67 0.99636
Target:  5'- aCC-GCGGAAGgcGGCCggUGCUggCCc -3'
miRNA:   3'- -GGuCGUCUUCuuCUGGuaGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 147083 0.67 0.996893
Target:  5'- cCCAGaCAGgcGGAGcGCuCGUCGUCcaggUCCg -3'
miRNA:   3'- -GGUC-GUCuuCUUC-UG-GUAGCGGa---AGG- -5'
13958 3' -50.9 NC_003521.1 + 219871 0.67 0.99636
Target:  5'- aUCAGCAuGAGGAacaGGGCCAUCaCg-UCCa -3'
miRNA:   3'- -GGUCGU-CUUCU---UCUGGUAGcGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 82397 0.67 0.99636
Target:  5'- -aAGCGGAuGAGGuCCGUCcCCUgggCCa -3'
miRNA:   3'- ggUCGUCUuCUUCuGGUAGcGGAa--GG- -5'
13958 3' -50.9 NC_003521.1 + 30912 0.67 0.99636
Target:  5'- gCGGCAGgcGAgagcgguccugGGGCaGUCGCCgugCCg -3'
miRNA:   3'- gGUCGUCuuCU-----------UCUGgUAGCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 195994 0.67 0.99636
Target:  5'- aCCAGCcccAGGAGcuguGGCgUGUCGCCcUCCg -3'
miRNA:   3'- -GGUCG---UCUUCuu--CUG-GUAGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 103191 0.67 0.996245
Target:  5'- uCCAGCgAGAAGuagcgcuccauGACCuggaugagGUCGCCggCCa -3'
miRNA:   3'- -GGUCG-UCUUCuu---------CUGG--------UAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 185507 0.67 0.995755
Target:  5'- uCUGGCAGAAGAacAGugUGUUGUgcuUUUCCa -3'
miRNA:   3'- -GGUCGUCUUCU--UCugGUAGCG---GAAGG- -5'
13958 3' -50.9 NC_003521.1 + 172963 0.67 0.995755
Target:  5'- aCGGUguaGGAGGggGuucauCCGggcCGCCUUCUg -3'
miRNA:   3'- gGUCG---UCUUCuuCu----GGUa--GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 123788 0.67 0.995755
Target:  5'- aCCAcGCAGAGGAu-GCCucguUCGCggUCCu -3'
miRNA:   3'- -GGU-CGUCUUCUucUGGu---AGCGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 115352 0.67 0.995755
Target:  5'- aCAGCAcAGGAGGucACgCGUCGCUggCCa -3'
miRNA:   3'- gGUCGUcUUCUUC--UG-GUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 104030 0.67 0.99569
Target:  5'- aCCAGCAGggGGuacacgcAGugcuCCGaCGCCgUCUg -3'
miRNA:   3'- -GGUCGUCuuCU-------UCu---GGUaGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 72407 0.67 0.995558
Target:  5'- aCCAGCggcggaggcacugaGGAAGAGGGCgAguccUCGCCgUCg -3'
miRNA:   3'- -GGUCG--------------UCUUCUUCUGgU----AGCGGaAGg -5'
13958 3' -50.9 NC_003521.1 + 164340 0.67 0.995755
Target:  5'- -aGGCAuGAcgacgaccuccgAGgcGACCGUCGCCguggCCg -3'
miRNA:   3'- ggUCGU-CU------------UCuuCUGGUAGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 133505 0.67 0.996893
Target:  5'- --cGUAGAGGAGGucguccucgaccGCCAUCGCC--CCu -3'
miRNA:   3'- gguCGUCUUCUUC------------UGGUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 96778 0.67 0.995755
Target:  5'- gCAGCGGAAGAAauUCGUCuUCUUCUg -3'
miRNA:   3'- gGUCGUCUUCUUcuGGUAGcGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 5393 0.68 0.993428
Target:  5'- gCCAGCAaGAGAcgacGACCAUCGCa---- -3'
miRNA:   3'- -GGUCGUcUUCUu---CUGGUAGCGgaagg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.